Experiment: Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02685 and LRK53_RS02690 are separated by 102 nucleotides LRK53_RS02690 and LRK53_RS02695 are separated by 109 nucleotides LRK53_RS02695 and LRK53_RS02700 are separated by 67 nucleotides
LRK53_RS02685: LRK53_RS02685 - aldo/keto reductase, at 621,323 to 622,267
_RS02685
LRK53_RS02690: LRK53_RS02690 - hypothetical protein, at 622,370 to 622,567
_RS02690
LRK53_RS02695: LRK53_RS02695 - LysR substrate-binding domain-containing protein, at 622,677 to 623,597
_RS02695
LRK53_RS02700: LRK53_RS02700 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 623,665 to 624,777
_RS02700
Position (kb) 622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 621.720 kb on + strand, within LRK53_RS02685 at 621.720 kb on + strand, within LRK53_RS02685 at 621.720 kb on + strand, within LRK53_RS02685 at 621.720 kb on + strand, within LRK53_RS02685 at 621.721 kb on - strand, within LRK53_RS02685 at 621.721 kb on - strand, within LRK53_RS02685 at 621.906 kb on + strand, within LRK53_RS02685 at 621.906 kb on + strand, within LRK53_RS02685 at 621.906 kb on + strand, within LRK53_RS02685 at 621.906 kb on + strand, within LRK53_RS02685 at 621.906 kb on + strand, within LRK53_RS02685 at 621.906 kb on + strand, within LRK53_RS02685 at 621.907 kb on - strand, within LRK53_RS02685 at 621.907 kb on - strand, within LRK53_RS02685 at 621.907 kb on - strand, within LRK53_RS02685 at 621.907 kb on - strand, within LRK53_RS02685 at 621.907 kb on - strand, within LRK53_RS02685 at 622.110 kb on + strand, within LRK53_RS02685 at 622.110 kb on + strand, within LRK53_RS02685 at 622.111 kb on - strand, within LRK53_RS02685 at 622.111 kb on - strand, within LRK53_RS02685 at 622.111 kb on - strand, within LRK53_RS02685 at 622.111 kb on - strand, within LRK53_RS02685 at 622.317 kb on + strand at 622.318 kb on - strand at 622.318 kb on - strand at 622.318 kb on - strand at 622.318 kb on - strand at 622.614 kb on + strand at 622.614 kb on + strand at 622.614 kb on + strand at 622.614 kb on + strand at 622.614 kb on + strand at 622.614 kb on + strand at 622.614 kb on + strand at 622.615 kb on - strand at 622.615 kb on - strand at 622.615 kb on - strand at 622.615 kb on - strand at 622.615 kb on - strand at 622.615 kb on - strand at 622.615 kb on - strand at 622.615 kb on - strand at 622.644 kb on - strand at 622.644 kb on - strand at 622.644 kb on - strand at 622.645 kb on + strand at 622.645 kb on + strand at 622.645 kb on + strand at 622.645 kb on + strand at 622.646 kb on - strand at 622.646 kb on - strand at 622.646 kb on - strand at 623.106 kb on + strand, within LRK53_RS02695 at 623.310 kb on + strand, within LRK53_RS02695 at 623.310 kb on + strand, within LRK53_RS02695 at 623.311 kb on - strand, within LRK53_RS02695 at 623.311 kb on - strand, within LRK53_RS02695 at 623.311 kb on - strand, within LRK53_RS02695 at 623.311 kb on - strand, within LRK53_RS02695 at 623.311 kb on - strand, within LRK53_RS02695 at 623.311 kb on - strand, within LRK53_RS02695 at 623.311 kb on - strand, within LRK53_RS02695 at 623.311 kb on - strand, within LRK53_RS02695 at 623.311 kb on - strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.442 kb on + strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.443 kb on - strand, within LRK53_RS02695 at 623.463 kb on + strand, within LRK53_RS02695 at 623.463 kb on + strand, within LRK53_RS02695 at 623.464 kb on - strand, within LRK53_RS02695 at 623.464 kb on - strand, within LRK53_RS02695 at 623.475 kb on + strand, within LRK53_RS02695 at 623.476 kb on - strand, within LRK53_RS02695 at 623.476 kb on - strand, within LRK53_RS02695 at 623.709 kb on + strand at 623.709 kb on + strand at 623.710 kb on - strand at 623.788 kb on - strand, within LRK53_RS02700 at 623.926 kb on + strand, within LRK53_RS02700 at 623.927 kb on - strand, within LRK53_RS02700 at 623.927 kb on - strand, within LRK53_RS02700 at 623.927 kb on - strand, within LRK53_RS02700 at 623.927 kb on - strand, within LRK53_RS02700 at 623.928 kb on + strand, within LRK53_RS02700 at 623.928 kb on + strand, within LRK53_RS02700 at 623.928 kb on + strand, within LRK53_RS02700 at 623.928 kb on + strand, within LRK53_RS02700 at 623.928 kb on + strand, within LRK53_RS02700 at 623.928 kb on + strand, within LRK53_RS02700 at 623.928 kb on + strand, within LRK53_RS02700 at 623.929 kb on - strand, within LRK53_RS02700 at 623.929 kb on - strand, within LRK53_RS02700 at 623.929 kb on - strand, within LRK53_RS02700 at 623.929 kb on - strand, within LRK53_RS02700 at 623.929 kb on - strand, within LRK53_RS02700 at 623.929 kb on - strand, within LRK53_RS02700 at 623.929 kb on - strand, within LRK53_RS02700 at 623.929 kb on - strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.067 kb on + strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.068 kb on - strand, within LRK53_RS02700 at 624.094 kb on + strand, within LRK53_RS02700 at 624.094 kb on + strand, within LRK53_RS02700 at 624.094 kb on + strand, within LRK53_RS02700 at 624.094 kb on + strand, within LRK53_RS02700 at 624.095 kb on - strand, within LRK53_RS02700 at 624.095 kb on - strand, within LRK53_RS02700 at 624.095 kb on - strand, within LRK53_RS02700 at 624.095 kb on - strand, within LRK53_RS02700 at 624.095 kb on - strand, within LRK53_RS02700 at 624.095 kb on - strand, within LRK53_RS02700 at 624.095 kb on - strand, within LRK53_RS02700 at 624.442 kb on + strand, within LRK53_RS02700 at 624.442 kb on + strand, within LRK53_RS02700 at 624.442 kb on + strand, within LRK53_RS02700 at 624.442 kb on + strand, within LRK53_RS02700 at 624.442 kb on + strand, within LRK53_RS02700 at 624.442 kb on + strand, within LRK53_RS02700 at 624.442 kb on + strand, within LRK53_RS02700 at 624.443 kb on - strand, within LRK53_RS02700 at 624.443 kb on - strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.473 kb on + strand, within LRK53_RS02700 at 624.474 kb on - strand, within LRK53_RS02700 at 624.590 kb on + strand, within LRK53_RS02700 at 624.591 kb on - strand, within LRK53_RS02700
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM remove 621,720 + LRK53_RS02685 0.42 +1.2 621,720 + LRK53_RS02685 0.42 -0.8 621,720 + LRK53_RS02685 0.42 -1.3 621,720 + LRK53_RS02685 0.42 -1.0 621,721 - LRK53_RS02685 0.42 -0.4 621,721 - LRK53_RS02685 0.42 -0.1 621,906 + LRK53_RS02685 0.62 -0.8 621,906 + LRK53_RS02685 0.62 +0.1 621,906 + LRK53_RS02685 0.62 +0.0 621,906 + LRK53_RS02685 0.62 -1.3 621,906 + LRK53_RS02685 0.62 -2.5 621,906 + LRK53_RS02685 0.62 -1.1 621,907 - LRK53_RS02685 0.62 +1.0 621,907 - LRK53_RS02685 0.62 -0.4 621,907 - LRK53_RS02685 0.62 +2.7 621,907 - LRK53_RS02685 0.62 -0.8 621,907 - LRK53_RS02685 0.62 +0.7 622,110 + LRK53_RS02685 0.83 -1.4 622,110 + LRK53_RS02685 0.83 -0.9 622,111 - LRK53_RS02685 0.83 -2.5 622,111 - LRK53_RS02685 0.83 -1.5 622,111 - LRK53_RS02685 0.83 -1.4 622,111 - LRK53_RS02685 0.83 +1.8 622,317 + -2.0 622,318 - +0.3 622,318 - +0.1 622,318 - -0.8 622,318 - -3.1 622,614 + -2.0 622,614 + -0.7 622,614 + -0.1 622,614 + -0.5 622,614 + -0.6 622,614 + -1.4 622,614 + -0.6 622,615 - -0.6 622,615 - -0.3 622,615 - -0.9 622,615 - -1.1 622,615 - -1.1 622,615 - -0.0 622,615 - -0.4 622,615 - -1.5 622,644 - -0.2 622,644 - -0.8 622,644 - -0.3 622,645 + -2.4 622,645 + +0.6 622,645 + +0.1 622,645 + +0.2 622,646 - +0.4 622,646 - -1.8 622,646 - -1.3 623,106 + LRK53_RS02695 0.47 -1.2 623,310 + LRK53_RS02695 0.69 -1.2 623,310 + LRK53_RS02695 0.69 -2.1 623,311 - LRK53_RS02695 0.69 +0.0 623,311 - LRK53_RS02695 0.69 -0.6 623,311 - LRK53_RS02695 0.69 -1.6 623,311 - LRK53_RS02695 0.69 +0.3 623,311 - LRK53_RS02695 0.69 -1.4 623,311 - LRK53_RS02695 0.69 -1.2 623,311 - LRK53_RS02695 0.69 -0.9 623,311 - LRK53_RS02695 0.69 -0.3 623,311 - LRK53_RS02695 0.69 -0.9 623,442 + LRK53_RS02695 0.83 -1.2 623,442 + LRK53_RS02695 0.83 -1.9 623,442 + LRK53_RS02695 0.83 -1.1 623,442 + LRK53_RS02695 0.83 -0.2 623,442 + LRK53_RS02695 0.83 -1.4 623,442 + LRK53_RS02695 0.83 -1.5 623,442 + LRK53_RS02695 0.83 -0.6 623,442 + LRK53_RS02695 0.83 +1.0 623,442 + LRK53_RS02695 0.83 -0.8 623,442 + LRK53_RS02695 0.83 -1.3 623,442 + LRK53_RS02695 0.83 -2.6 623,442 + LRK53_RS02695 0.83 -0.7 623,442 + LRK53_RS02695 0.83 -0.5 623,442 + LRK53_RS02695 0.83 -1.0 623,442 + LRK53_RS02695 0.83 -1.5 623,442 + LRK53_RS02695 0.83 +3.2 623,442 + LRK53_RS02695 0.83 -2.9 623,442 + LRK53_RS02695 0.83 -2.8 623,442 + LRK53_RS02695 0.83 -1.4 623,442 + LRK53_RS02695 0.83 -0.8 623,442 + LRK53_RS02695 0.83 +1.4 623,443 - LRK53_RS02695 0.83 -1.2 623,443 - LRK53_RS02695 0.83 +1.0 623,443 - LRK53_RS02695 0.83 +0.7 623,443 - LRK53_RS02695 0.83 -1.4 623,443 - LRK53_RS02695 0.83 -2.7 623,443 - LRK53_RS02695 0.83 -1.5 623,443 - LRK53_RS02695 0.83 -0.9 623,443 - LRK53_RS02695 0.83 -2.0 623,443 - LRK53_RS02695 0.83 +0.1 623,443 - LRK53_RS02695 0.83 +0.5 623,463 + LRK53_RS02695 0.85 -1.7 623,463 + LRK53_RS02695 0.85 -1.8 623,464 - LRK53_RS02695 0.85 -1.0 623,464 - LRK53_RS02695 0.85 +0.8 623,475 + LRK53_RS02695 0.87 +0.2 623,476 - LRK53_RS02695 0.87 -1.7 623,476 - LRK53_RS02695 0.87 -0.5 623,709 + -2.8 623,709 + -2.8 623,710 - -1.8 623,788 - LRK53_RS02700 0.11 -1.4 623,926 + LRK53_RS02700 0.23 -0.4 623,927 - LRK53_RS02700 0.24 -1.0 623,927 - LRK53_RS02700 0.24 -1.3 623,927 - LRK53_RS02700 0.24 -0.8 623,927 - LRK53_RS02700 0.24 -0.5 623,928 + LRK53_RS02700 0.24 -0.8 623,928 + LRK53_RS02700 0.24 -1.9 623,928 + LRK53_RS02700 0.24 -0.8 623,928 + LRK53_RS02700 0.24 -1.0 623,928 + LRK53_RS02700 0.24 -0.4 623,928 + LRK53_RS02700 0.24 -0.9 623,928 + LRK53_RS02700 0.24 -1.0 623,929 - LRK53_RS02700 0.24 +0.9 623,929 - LRK53_RS02700 0.24 -1.1 623,929 - LRK53_RS02700 0.24 -0.6 623,929 - LRK53_RS02700 0.24 -0.3 623,929 - LRK53_RS02700 0.24 +0.3 623,929 - LRK53_RS02700 0.24 +1.0 623,929 - LRK53_RS02700 0.24 -0.9 623,929 - LRK53_RS02700 0.24 -2.8 624,067 + LRK53_RS02700 0.36 +1.0 624,067 + LRK53_RS02700 0.36 -2.3 624,067 + LRK53_RS02700 0.36 +0.0 624,067 + LRK53_RS02700 0.36 -0.9 624,067 + LRK53_RS02700 0.36 -0.2 624,067 + LRK53_RS02700 0.36 +0.8 624,067 + LRK53_RS02700 0.36 -0.5 624,067 + LRK53_RS02700 0.36 -2.1 624,067 + LRK53_RS02700 0.36 -1.3 624,067 + LRK53_RS02700 0.36 -0.9 624,067 + LRK53_RS02700 0.36 +1.5 624,067 + LRK53_RS02700 0.36 -1.3 624,067 + LRK53_RS02700 0.36 +0.7 624,067 + LRK53_RS02700 0.36 -0.2 624,067 + LRK53_RS02700 0.36 -1.2 624,067 + LRK53_RS02700 0.36 -2.3 624,067 + LRK53_RS02700 0.36 -0.2 624,067 + LRK53_RS02700 0.36 -2.4 624,068 - LRK53_RS02700 0.36 -0.8 624,068 - LRK53_RS02700 0.36 -0.3 624,068 - LRK53_RS02700 0.36 -0.2 624,068 - LRK53_RS02700 0.36 -0.2 624,068 - LRK53_RS02700 0.36 -1.2 624,068 - LRK53_RS02700 0.36 +0.3 624,068 - LRK53_RS02700 0.36 -0.5 624,068 - LRK53_RS02700 0.36 -1.3 624,068 - LRK53_RS02700 0.36 -0.9 624,068 - LRK53_RS02700 0.36 +0.5 624,068 - LRK53_RS02700 0.36 -0.3 624,068 - LRK53_RS02700 0.36 +1.0 624,068 - LRK53_RS02700 0.36 -2.2 624,068 - LRK53_RS02700 0.36 -1.3 624,068 - LRK53_RS02700 0.36 +1.3 624,068 - LRK53_RS02700 0.36 -0.7 624,068 - LRK53_RS02700 0.36 -0.3 624,068 - LRK53_RS02700 0.36 +1.0 624,068 - LRK53_RS02700 0.36 -1.0 624,068 - LRK53_RS02700 0.36 -0.2 624,068 - LRK53_RS02700 0.36 -1.5 624,068 - LRK53_RS02700 0.36 +0.7 624,094 + LRK53_RS02700 0.39 -0.3 624,094 + LRK53_RS02700 0.39 +0.0 624,094 + LRK53_RS02700 0.39 +0.2 624,094 + LRK53_RS02700 0.39 -0.3 624,095 - LRK53_RS02700 0.39 -0.8 624,095 - LRK53_RS02700 0.39 -1.6 624,095 - LRK53_RS02700 0.39 +1.5 624,095 - LRK53_RS02700 0.39 -1.6 624,095 - LRK53_RS02700 0.39 -0.6 624,095 - LRK53_RS02700 0.39 -0.8 624,095 - LRK53_RS02700 0.39 -1.6 624,442 + LRK53_RS02700 0.70 -0.9 624,442 + LRK53_RS02700 0.70 -1.8 624,442 + LRK53_RS02700 0.70 -0.9 624,442 + LRK53_RS02700 0.70 +0.1 624,442 + LRK53_RS02700 0.70 +0.0 624,442 + LRK53_RS02700 0.70 -0.3 624,442 + LRK53_RS02700 0.70 -1.2 624,443 - LRK53_RS02700 0.70 -0.9 624,443 - LRK53_RS02700 0.70 -0.5 624,473 + LRK53_RS02700 0.73 -0.8 624,473 + LRK53_RS02700 0.73 -1.2 624,473 + LRK53_RS02700 0.73 -0.8 624,473 + LRK53_RS02700 0.73 -0.3 624,473 + LRK53_RS02700 0.73 -0.3 624,473 + LRK53_RS02700 0.73 -1.3 624,473 + LRK53_RS02700 0.73 +1.4 624,473 + LRK53_RS02700 0.73 +0.0 624,473 + LRK53_RS02700 0.73 -0.3 624,473 + LRK53_RS02700 0.73 -1.4 624,474 - LRK53_RS02700 0.73 +0.2 624,590 + LRK53_RS02700 0.83 +0.6 624,591 - LRK53_RS02700 0.83 +1.0
Or see this region's nucleotide sequence