Experiment: Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01450 and LRK53_RS01455 are separated by 2 nucleotides LRK53_RS01455 and LRK53_RS01460 are separated by 69 nucleotides LRK53_RS01460 and LRK53_RS01465 are separated by 255 nucleotides
LRK53_RS01450: LRK53_RS01450 - EF-hand domain-containing protein, at 348,961 to 349,284
_RS01450
LRK53_RS01455: LRK53_RS01455 - GTP cyclohydrolase I FolE, at 349,287 to 349,892
_RS01455
LRK53_RS01460: LRK53_RS01460 - DNA recombination protein RmuC, at 349,962 to 351,491
_RS01460
LRK53_RS01465: LRK53_RS01465 - FAD-dependent oxidoreductase, at 351,747 to 352,940
_RS01465
Position (kb) 349
350
351
352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 348.998 kb on + strand, within LRK53_RS01450 at 348.998 kb on + strand, within LRK53_RS01450 at 348.999 kb on - strand, within LRK53_RS01450 at 348.999 kb on - strand, within LRK53_RS01450 at 349.052 kb on + strand, within LRK53_RS01450 at 349.053 kb on - strand, within LRK53_RS01450 at 349.053 kb on - strand, within LRK53_RS01450 at 349.053 kb on - strand, within LRK53_RS01450 at 349.053 kb on - strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.154 kb on + strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.155 kb on - strand, within LRK53_RS01450 at 349.163 kb on + strand, within LRK53_RS01450 at 349.164 kb on - strand, within LRK53_RS01450 at 349.164 kb on - strand, within LRK53_RS01450 at 349.215 kb on - strand, within LRK53_RS01450 at 349.892 kb on + strand at 349.893 kb on - strand at 349.893 kb on - strand at 349.893 kb on - strand at 349.893 kb on - strand at 349.893 kb on - strand at 349.893 kb on - strand at 349.893 kb on - strand at 349.893 kb on - strand at 349.893 kb on - strand at 349.919 kb on + strand at 349.920 kb on - strand at 349.991 kb on + strand at 349.992 kb on - strand at 349.992 kb on - strand at 349.992 kb on - strand at 350.233 kb on + strand, within LRK53_RS01460 at 350.233 kb on + strand, within LRK53_RS01460 at 350.233 kb on + strand, within LRK53_RS01460 at 350.233 kb on + strand, within LRK53_RS01460 at 350.233 kb on + strand, within LRK53_RS01460 at 350.233 kb on + strand, within LRK53_RS01460 at 350.233 kb on + strand, within LRK53_RS01460 at 350.233 kb on + strand, within LRK53_RS01460 at 350.234 kb on - strand, within LRK53_RS01460 at 350.234 kb on - strand, within LRK53_RS01460 at 350.234 kb on - strand, within LRK53_RS01460 at 350.234 kb on - strand, within LRK53_RS01460 at 350.234 kb on - strand, within LRK53_RS01460 at 350.234 kb on - strand, within LRK53_RS01460 at 350.299 kb on + strand, within LRK53_RS01460 at 350.299 kb on + strand, within LRK53_RS01460 at 350.299 kb on + strand, within LRK53_RS01460 at 350.299 kb on + strand, within LRK53_RS01460 at 350.300 kb on - strand, within LRK53_RS01460 at 350.300 kb on - strand, within LRK53_RS01460 at 350.316 kb on + strand, within LRK53_RS01460 at 350.330 kb on + strand, within LRK53_RS01460 at 350.330 kb on + strand, within LRK53_RS01460 at 350.330 kb on + strand, within LRK53_RS01460 at 350.331 kb on - strand, within LRK53_RS01460 at 350.368 kb on + strand, within LRK53_RS01460 at 350.424 kb on + strand, within LRK53_RS01460 at 350.461 kb on + strand, within LRK53_RS01460 at 350.461 kb on + strand, within LRK53_RS01460 at 350.462 kb on - strand, within LRK53_RS01460 at 350.462 kb on - strand, within LRK53_RS01460 at 350.462 kb on - strand, within LRK53_RS01460 at 350.462 kb on - strand, within LRK53_RS01460 at 350.462 kb on - strand, within LRK53_RS01460 at 350.462 kb on - strand, within LRK53_RS01460 at 350.473 kb on + strand, within LRK53_RS01460 at 350.473 kb on + strand, within LRK53_RS01460 at 350.474 kb on - strand, within LRK53_RS01460 at 350.474 kb on - strand, within LRK53_RS01460 at 350.579 kb on - strand, within LRK53_RS01460 at 350.715 kb on + strand, within LRK53_RS01460 at 350.715 kb on + strand, within LRK53_RS01460 at 351.074 kb on + strand, within LRK53_RS01460 at 351.074 kb on + strand, within LRK53_RS01460 at 351.074 kb on + strand, within LRK53_RS01460 at 351.074 kb on + strand, within LRK53_RS01460 at 351.074 kb on + strand, within LRK53_RS01460 at 351.074 kb on + strand, within LRK53_RS01460 at 351.075 kb on - strand, within LRK53_RS01460 at 351.338 kb on - strand, within LRK53_RS01460 at 351.423 kb on + strand at 351.447 kb on + strand at 351.447 kb on + strand at 351.447 kb on + strand at 351.447 kb on + strand at 351.535 kb on + strand at 351.535 kb on + strand at 351.536 kb on - strand at 351.536 kb on - strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.655 kb on + strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.765 kb on + strand at 351.765 kb on + strand at 351.765 kb on + strand at 351.766 kb on - strand at 351.766 kb on - strand at 351.873 kb on + strand, within LRK53_RS01465 at 351.968 kb on + strand, within LRK53_RS01465 at 351.969 kb on - strand, within LRK53_RS01465 at 351.969 kb on - strand, within LRK53_RS01465 at 352.035 kb on + strand, within LRK53_RS01465 at 352.035 kb on + strand, within LRK53_RS01465 at 352.134 kb on + strand, within LRK53_RS01465 at 352.284 kb on + strand, within LRK53_RS01465 at 352.305 kb on + strand, within LRK53_RS01465 at 352.306 kb on - strand, within LRK53_RS01465 at 352.306 kb on - strand, within LRK53_RS01465 at 352.317 kb on + strand, within LRK53_RS01465 at 352.317 kb on + strand, within LRK53_RS01465 at 352.317 kb on + strand, within LRK53_RS01465 at 352.317 kb on + strand, within LRK53_RS01465 at 352.317 kb on + strand, within LRK53_RS01465 at 352.317 kb on + strand, within LRK53_RS01465 at 352.317 kb on + strand, within LRK53_RS01465 at 352.317 kb on + strand, within LRK53_RS01465 at 352.317 kb on + strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.318 kb on - strand, within LRK53_RS01465 at 352.320 kb on + strand, within LRK53_RS01465 at 352.321 kb on - strand, within LRK53_RS01465 at 352.321 kb on - strand, within LRK53_RS01465
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM remove 348,998 + LRK53_RS01450 0.11 -0.4 348,998 + LRK53_RS01450 0.11 -0.6 348,999 - LRK53_RS01450 0.12 +1.8 348,999 - LRK53_RS01450 0.12 -1.5 349,052 + LRK53_RS01450 0.28 -0.2 349,053 - LRK53_RS01450 0.28 -0.6 349,053 - LRK53_RS01450 0.28 +0.3 349,053 - LRK53_RS01450 0.28 +0.0 349,053 - LRK53_RS01450 0.28 -0.5 349,154 + LRK53_RS01450 0.60 +0.9 349,154 + LRK53_RS01450 0.60 -0.3 349,154 + LRK53_RS01450 0.60 -0.5 349,154 + LRK53_RS01450 0.60 +0.3 349,154 + LRK53_RS01450 0.60 -0.4 349,154 + LRK53_RS01450 0.60 -1.5 349,154 + LRK53_RS01450 0.60 +1.1 349,154 + LRK53_RS01450 0.60 -1.8 349,154 + LRK53_RS01450 0.60 -1.0 349,154 + LRK53_RS01450 0.60 -1.1 349,154 + LRK53_RS01450 0.60 -1.1 349,154 + LRK53_RS01450 0.60 -1.6 349,154 + LRK53_RS01450 0.60 -1.7 349,154 + LRK53_RS01450 0.60 -0.5 349,154 + LRK53_RS01450 0.60 -1.2 349,154 + LRK53_RS01450 0.60 -0.5 349,154 + LRK53_RS01450 0.60 +1.5 349,154 + LRK53_RS01450 0.60 +0.5 349,154 + LRK53_RS01450 0.60 -0.2 349,154 + LRK53_RS01450 0.60 +0.3 349,154 + LRK53_RS01450 0.60 -1.7 349,154 + LRK53_RS01450 0.60 -1.5 349,154 + LRK53_RS01450 0.60 -0.6 349,154 + LRK53_RS01450 0.60 -0.2 349,154 + LRK53_RS01450 0.60 -2.0 349,154 + LRK53_RS01450 0.60 -0.2 349,155 - LRK53_RS01450 0.60 -0.5 349,155 - LRK53_RS01450 0.60 +0.5 349,155 - LRK53_RS01450 0.60 -1.7 349,155 - LRK53_RS01450 0.60 -0.3 349,155 - LRK53_RS01450 0.60 -2.7 349,155 - LRK53_RS01450 0.60 +0.0 349,155 - LRK53_RS01450 0.60 -0.6 349,155 - LRK53_RS01450 0.60 -2.0 349,155 - LRK53_RS01450 0.60 +0.3 349,155 - LRK53_RS01450 0.60 -0.4 349,155 - LRK53_RS01450 0.60 -1.9 349,155 - LRK53_RS01450 0.60 -0.3 349,155 - LRK53_RS01450 0.60 -0.2 349,155 - LRK53_RS01450 0.60 -1.3 349,155 - LRK53_RS01450 0.60 -2.5 349,155 - LRK53_RS01450 0.60 -0.9 349,155 - LRK53_RS01450 0.60 -0.8 349,155 - LRK53_RS01450 0.60 +0.5 349,155 - LRK53_RS01450 0.60 -0.2 349,155 - LRK53_RS01450 0.60 -1.7 349,155 - LRK53_RS01450 0.60 -0.3 349,155 - LRK53_RS01450 0.60 -0.6 349,155 - LRK53_RS01450 0.60 -0.5 349,163 + LRK53_RS01450 0.62 -1.1 349,164 - LRK53_RS01450 0.63 +0.2 349,164 - LRK53_RS01450 0.63 -0.3 349,215 - LRK53_RS01450 0.78 -0.6 349,892 + -0.2 349,893 - -1.2 349,893 - -1.7 349,893 - -1.1 349,893 - -0.2 349,893 - -0.8 349,893 - +0.1 349,893 - +2.0 349,893 - -2.1 349,893 - +0.7 349,919 + -0.6 349,920 - -1.6 349,991 + +0.1 349,992 - -0.9 349,992 - -1.0 349,992 - -1.6 350,233 + LRK53_RS01460 0.18 -0.2 350,233 + LRK53_RS01460 0.18 -0.2 350,233 + LRK53_RS01460 0.18 -0.3 350,233 + LRK53_RS01460 0.18 -0.3 350,233 + LRK53_RS01460 0.18 -0.6 350,233 + LRK53_RS01460 0.18 -2.5 350,233 + LRK53_RS01460 0.18 -0.3 350,233 + LRK53_RS01460 0.18 +1.3 350,234 - LRK53_RS01460 0.18 -1.1 350,234 - LRK53_RS01460 0.18 -1.3 350,234 - LRK53_RS01460 0.18 -0.6 350,234 - LRK53_RS01460 0.18 +0.7 350,234 - LRK53_RS01460 0.18 -1.2 350,234 - LRK53_RS01460 0.18 -0.6 350,299 + LRK53_RS01460 0.22 -0.5 350,299 + LRK53_RS01460 0.22 -0.4 350,299 + LRK53_RS01460 0.22 -0.9 350,299 + LRK53_RS01460 0.22 -0.6 350,300 - LRK53_RS01460 0.22 -0.9 350,300 - LRK53_RS01460 0.22 -0.6 350,316 + LRK53_RS01460 0.23 -0.2 350,330 + LRK53_RS01460 0.24 -1.3 350,330 + LRK53_RS01460 0.24 -2.3 350,330 + LRK53_RS01460 0.24 -1.6 350,331 - LRK53_RS01460 0.24 +0.5 350,368 + LRK53_RS01460 0.27 -0.9 350,424 + LRK53_RS01460 0.30 -0.2 350,461 + LRK53_RS01460 0.33 -1.2 350,461 + LRK53_RS01460 0.33 +0.3 350,462 - LRK53_RS01460 0.33 +0.6 350,462 - LRK53_RS01460 0.33 -0.5 350,462 - LRK53_RS01460 0.33 -0.2 350,462 - LRK53_RS01460 0.33 +1.0 350,462 - LRK53_RS01460 0.33 -0.7 350,462 - LRK53_RS01460 0.33 -0.2 350,473 + LRK53_RS01460 0.33 +1.4 350,473 + LRK53_RS01460 0.33 -1.6 350,474 - LRK53_RS01460 0.33 +0.0 350,474 - LRK53_RS01460 0.33 -2.7 350,579 - LRK53_RS01460 0.40 -0.5 350,715 + LRK53_RS01460 0.49 -0.3 350,715 + LRK53_RS01460 0.49 -0.7 351,074 + LRK53_RS01460 0.73 -1.3 351,074 + LRK53_RS01460 0.73 +0.4 351,074 + LRK53_RS01460 0.73 +1.1 351,074 + LRK53_RS01460 0.73 -2.1 351,074 + LRK53_RS01460 0.73 +0.3 351,074 + LRK53_RS01460 0.73 -1.5 351,075 - LRK53_RS01460 0.73 +0.4 351,338 - LRK53_RS01460 0.90 -1.0 351,423 + +0.7 351,447 + +0.3 351,447 + -1.2 351,447 + -1.0 351,447 + -1.8 351,535 + +1.4 351,535 + +0.1 351,536 - +0.3 351,536 - +0.9 351,655 + -0.7 351,655 + -1.7 351,655 + -1.1 351,655 + -1.7 351,655 + -0.5 351,655 + +2.0 351,655 + -2.1 351,655 + -0.8 351,656 - +1.3 351,656 - -0.6 351,656 - -0.3 351,656 - -3.0 351,656 - -0.1 351,656 - +0.2 351,656 - -0.3 351,656 - -2.3 351,656 - +0.7 351,656 - -0.6 351,656 - -1.3 351,656 - -0.7 351,656 - -1.1 351,765 + -0.5 351,765 + -3.2 351,765 + -0.3 351,766 - +0.0 351,766 - -1.5 351,873 + LRK53_RS01465 0.11 -0.2 351,968 + LRK53_RS01465 0.19 -1.5 351,969 - LRK53_RS01465 0.19 -0.1 351,969 - LRK53_RS01465 0.19 -2.1 352,035 + LRK53_RS01465 0.24 -1.1 352,035 + LRK53_RS01465 0.24 -1.8 352,134 + LRK53_RS01465 0.32 -1.0 352,284 + LRK53_RS01465 0.45 -0.2 352,305 + LRK53_RS01465 0.47 -0.8 352,306 - LRK53_RS01465 0.47 -1.9 352,306 - LRK53_RS01465 0.47 +0.1 352,317 + LRK53_RS01465 0.48 -1.3 352,317 + LRK53_RS01465 0.48 -0.7 352,317 + LRK53_RS01465 0.48 -1.0 352,317 + LRK53_RS01465 0.48 -1.1 352,317 + LRK53_RS01465 0.48 -2.1 352,317 + LRK53_RS01465 0.48 +2.9 352,317 + LRK53_RS01465 0.48 -2.0 352,317 + LRK53_RS01465 0.48 -0.3 352,317 + LRK53_RS01465 0.48 +2.4 352,318 - LRK53_RS01465 0.48 -0.1 352,318 - LRK53_RS01465 0.48 -1.3 352,318 - LRK53_RS01465 0.48 -1.7 352,318 - LRK53_RS01465 0.48 +0.0 352,318 - LRK53_RS01465 0.48 +0.2 352,318 - LRK53_RS01465 0.48 +0.0 352,318 - LRK53_RS01465 0.48 -0.2 352,318 - LRK53_RS01465 0.48 +0.2 352,318 - LRK53_RS01465 0.48 -0.1 352,318 - LRK53_RS01465 0.48 +0.3 352,320 + LRK53_RS01465 0.48 -0.3 352,321 - LRK53_RS01465 0.48 -1.2 352,321 - LRK53_RS01465 0.48 -1.1
Or see this region's nucleotide sequence