Strain Fitness in Escherichia coli ECOR38 around HEPCGN_25415

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_25400 and HEPCGN_25405 overlap by 8 nucleotidesHEPCGN_25405 and HEPCGN_25410 are separated by 15 nucleotidesHEPCGN_25410 and HEPCGN_25415 overlap by 4 nucleotidesHEPCGN_25415 and yjdB are separated by 7 nucleotidesyjdB and HEPCGN_25425 are separated by 18 nucleotides HEPCGN_25400: HEPCGN_25400 - DNA-packaging protein FI, at 3,819,806 to 3,820,189 _25400 HEPCGN_25405: HEPCGN_25405 - phage tail protein, at 3,820,182 to 3,820,535 _25405 HEPCGN_25410: HEPCGN_25410 - phage tail protein, at 3,820,551 to 3,821,084 _25410 HEPCGN_25415: HEPCGN_25415 - phage tail protein, at 3,821,081 to 3,821,476 _25415 HEPCGN_25420: yjdB - phage tail protein, at 3,821,484 to 3,822,230 yjdB HEPCGN_25425: HEPCGN_25425 - phage minor tail protein G, at 3,822,249 to 3,822,680 _25425 Position (kb) 3821 3822Strain fitness (log2 ratio) -2 -1 0 1 2at 3820.130 kb on - strand, within HEPCGN_25400at 3820.161 kb on + strandat 3820.161 kb on + strandat 3820.376 kb on - strand, within HEPCGN_25405at 3820.430 kb on + strand, within HEPCGN_25405at 3820.485 kb on + strand, within HEPCGN_25405at 3820.486 kb on - strand, within HEPCGN_25405at 3820.583 kb on + strandat 3820.601 kb on + strandat 3820.602 kb on - strandat 3820.699 kb on + strand, within HEPCGN_25410at 3820.840 kb on + strand, within HEPCGN_25410at 3820.840 kb on + strand, within HEPCGN_25410at 3820.841 kb on - strand, within HEPCGN_25410at 3820.841 kb on - strand, within HEPCGN_25410at 3820.943 kb on + strand, within HEPCGN_25410at 3821.043 kb on + strandat 3821.044 kb on - strandat 3821.204 kb on + strand, within HEPCGN_25415at 3821.205 kb on - strand, within HEPCGN_25415at 3821.223 kb on - strand, within HEPCGN_25415at 3821.248 kb on + strand, within HEPCGN_25415at 3821.399 kb on + strand, within HEPCGN_25415at 3821.400 kb on - strand, within HEPCGN_25415at 3821.405 kb on + strand, within HEPCGN_25415at 3821.453 kb on + strandat 3821.461 kb on + strandat 3821.461 kb on + strandat 3821.465 kb on + strandat 3821.562 kb on + strand, within yjdBat 3821.562 kb on + strand, within yjdBat 3821.603 kb on + strand, within yjdBat 3821.654 kb on + strand, within yjdBat 3821.654 kb on + strand, within yjdBat 3821.655 kb on - strand, within yjdBat 3821.655 kb on - strand, within yjdBat 3821.658 kb on + strand, within yjdBat 3821.659 kb on - strand, within yjdBat 3821.659 kb on - strand, within yjdBat 3821.721 kb on - strand, within yjdBat 3821.772 kb on - strand, within yjdBat 3821.773 kb on + strand, within yjdBat 3821.773 kb on + strand, within yjdBat 3821.773 kb on + strand, within yjdBat 3821.808 kb on - strand, within yjdBat 3821.925 kb on - strand, within yjdBat 3821.925 kb on - strand, within yjdBat 3821.935 kb on + strand, within yjdBat 3822.113 kb on + strand, within yjdBat 3822.123 kb on - strand, within yjdBat 3822.123 kb on - strand, within yjdBat 3822.212 kb on + strandat 3822.213 kb on - strandat 3822.278 kb on + strandat 3822.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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3,820,130 - HEPCGN_25400 0.84 +0.0
3,820,161 + -0.2
3,820,161 + +0.0
3,820,376 - HEPCGN_25405 0.55 +0.0
3,820,430 + HEPCGN_25405 0.70 -0.1
3,820,485 + HEPCGN_25405 0.86 +0.8
3,820,486 - HEPCGN_25405 0.86 +0.9
3,820,583 + -0.5
3,820,601 + -0.6
3,820,602 - -1.4
3,820,699 + HEPCGN_25410 0.28 +0.1
3,820,840 + HEPCGN_25410 0.54 -0.3
3,820,840 + HEPCGN_25410 0.54 -0.0
3,820,841 - HEPCGN_25410 0.54 +0.4
3,820,841 - HEPCGN_25410 0.54 -0.3
3,820,943 + HEPCGN_25410 0.73 -1.0
3,821,043 + -0.3
3,821,044 - +0.3
3,821,204 + HEPCGN_25415 0.31 +0.6
3,821,205 - HEPCGN_25415 0.31 -0.4
3,821,223 - HEPCGN_25415 0.36 +0.3
3,821,248 + HEPCGN_25415 0.42 -1.0
3,821,399 + HEPCGN_25415 0.80 +0.5
3,821,400 - HEPCGN_25415 0.81 -0.4
3,821,405 + HEPCGN_25415 0.82 +0.4
3,821,453 + +1.1
3,821,461 + +0.1
3,821,461 + -0.4
3,821,465 + +0.2
3,821,562 + yjdB HEPCGN_25420 0.10 +0.3
3,821,562 + yjdB HEPCGN_25420 0.10 +0.2
3,821,603 + yjdB HEPCGN_25420 0.16 -0.7
3,821,654 + yjdB HEPCGN_25420 0.23 +1.0
3,821,654 + yjdB HEPCGN_25420 0.23 -0.4
3,821,655 - yjdB HEPCGN_25420 0.23 +0.1
3,821,655 - yjdB HEPCGN_25420 0.23 +0.1
3,821,658 + yjdB HEPCGN_25420 0.23 -1.5
3,821,659 - yjdB HEPCGN_25420 0.23 +0.9
3,821,659 - yjdB HEPCGN_25420 0.23 +1.9
3,821,721 - yjdB HEPCGN_25420 0.32 +0.2
3,821,772 - yjdB HEPCGN_25420 0.39 +0.1
3,821,773 + yjdB HEPCGN_25420 0.39 +0.2
3,821,773 + yjdB HEPCGN_25420 0.39 -0.9
3,821,773 + yjdB HEPCGN_25420 0.39 +0.3
3,821,808 - yjdB HEPCGN_25420 0.43 -0.4
3,821,925 - yjdB HEPCGN_25420 0.59 -1.0
3,821,925 - yjdB HEPCGN_25420 0.59 -2.0
3,821,935 + yjdB HEPCGN_25420 0.60 +0.0
3,822,113 + yjdB HEPCGN_25420 0.84 -0.3
3,822,123 - yjdB HEPCGN_25420 0.86 +0.8
3,822,123 - yjdB HEPCGN_25420 0.86 +0.7
3,822,212 + -0.0
3,822,213 - +0.2
3,822,278 + +0.0
3,822,279 - -0.1

Or see this region's nucleotide sequence