Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kefC and kefF overlap by 8 nucleotides kefF and yaaU are separated by 107 nucleotides yaaU and fixX are separated by 57 nucleotides fixX and fixX overlap by 4 nucleotides
HEPCGN_08855: kefC - glutathione-regulated potassium-efflux system protein KefC, at 513,346 to 515,208
kefC
HEPCGN_08860: kefF - glutathione-regulated potassium-efflux system oxidoreductase KefF, at 515,201 to 515,731
kefF
HEPCGN_08865: yaaU - Putative metabolite transport protein YaaU, at 515,839 to 517,170
yaaU
HEPCGN_08870: fixX - ferredoxin-like protein FixX, at 517,228 to 517,515
fixX
HEPCGN_08875: fixX - ferredoxin-like protein FixX, at 517,512 to 518,798
fixX
Position (kb) 515
516
517
518 Strain fitness (log2 ratio) -1
0
1 at 514.888 kb on + strand, within kefC at 514.889 kb on - strand, within kefC at 515.005 kb on - strand, within kefC at 515.091 kb on + strand at 515.091 kb on + strand at 515.091 kb on + strand at 515.091 kb on + strand at 515.092 kb on - strand at 515.092 kb on - strand at 515.092 kb on - strand at 515.116 kb on + strand at 515.116 kb on + strand at 515.197 kb on - strand at 515.197 kb on - strand at 515.197 kb on - strand at 515.197 kb on - strand at 515.197 kb on - strand at 515.243 kb on - strand at 515.243 kb on - strand at 515.243 kb on - strand at 515.244 kb on + strand at 515.245 kb on - strand at 515.284 kb on + strand, within kefF at 515.285 kb on - strand, within kefF at 515.285 kb on - strand, within kefF at 515.332 kb on - strand, within kefF at 515.349 kb on - strand, within kefF at 515.470 kb on - strand, within kefF at 515.470 kb on - strand, within kefF at 515.736 kb on - strand at 515.779 kb on + strand at 515.780 kb on - strand at 515.796 kb on + strand at 515.804 kb on - strand at 515.807 kb on - strand at 515.868 kb on + strand at 515.868 kb on + strand at 515.939 kb on - strand at 515.981 kb on + strand, within yaaU at 515.981 kb on + strand, within yaaU at 515.982 kb on - strand, within yaaU at 515.982 kb on - strand, within yaaU at 515.982 kb on - strand, within yaaU at 515.986 kb on - strand, within yaaU at 516.031 kb on - strand, within yaaU at 516.093 kb on + strand, within yaaU at 516.140 kb on + strand, within yaaU at 516.161 kb on - strand, within yaaU at 516.282 kb on + strand, within yaaU at 516.307 kb on - strand, within yaaU at 516.554 kb on - strand, within yaaU at 516.568 kb on + strand, within yaaU at 516.674 kb on + strand, within yaaU at 516.674 kb on + strand, within yaaU at 516.716 kb on + strand, within yaaU at 516.717 kb on - strand, within yaaU at 516.826 kb on - strand, within yaaU at 516.945 kb on + strand, within yaaU at 516.945 kb on + strand, within yaaU at 516.947 kb on + strand, within yaaU at 516.948 kb on - strand, within yaaU at 517.077 kb on - strand at 517.129 kb on - strand at 517.175 kb on + strand at 517.373 kb on + strand, within fixX at 517.373 kb on + strand, within fixX at 517.670 kb on + strand, within fixX at 517.701 kb on + strand, within fixX at 517.712 kb on - strand, within fixX at 517.756 kb on + strand, within fixX at 517.775 kb on + strand, within fixX at 517.862 kb on + strand, within fixX at 517.862 kb on + strand, within fixX at 517.959 kb on + strand, within fixX at 517.972 kb on + strand, within fixX at 517.973 kb on - strand, within fixX at 518.105 kb on + strand, within fixX at 518.105 kb on + strand, within fixX at 518.117 kb on + strand, within fixX at 518.117 kb on + strand, within fixX
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 514,888 + kefC HEPCGN_08855 0.83 -0.7 514,889 - kefC HEPCGN_08855 0.83 +0.1 515,005 - kefC HEPCGN_08855 0.89 +0.4 515,091 + -0.3 515,091 + +1.0 515,091 + +0.5 515,091 + -0.3 515,092 - -0.7 515,092 - -0.0 515,092 - -0.7 515,116 + -0.2 515,116 + +0.5 515,197 - -0.2 515,197 - +0.4 515,197 - -0.6 515,197 - -0.2 515,197 - -0.2 515,243 - -0.5 515,243 - +0.6 515,243 - +0.3 515,244 + -0.3 515,245 - -0.0 515,284 + kefF HEPCGN_08860 0.16 -0.1 515,285 - kefF HEPCGN_08860 0.16 +0.4 515,285 - kefF HEPCGN_08860 0.16 +0.3 515,332 - kefF HEPCGN_08860 0.25 +1.6 515,349 - kefF HEPCGN_08860 0.28 -0.0 515,470 - kefF HEPCGN_08860 0.51 +1.5 515,470 - kefF HEPCGN_08860 0.51 -0.0 515,736 - -0.1 515,779 + -0.0 515,780 - -0.3 515,796 + +1.6 515,804 - +0.8 515,807 - +0.2 515,868 + +0.2 515,868 + -0.2 515,939 - +0.2 515,981 + yaaU HEPCGN_08865 0.11 +0.6 515,981 + yaaU HEPCGN_08865 0.11 -0.2 515,982 - yaaU HEPCGN_08865 0.11 +0.1 515,982 - yaaU HEPCGN_08865 0.11 +0.5 515,982 - yaaU HEPCGN_08865 0.11 +0.8 515,986 - yaaU HEPCGN_08865 0.11 +0.3 516,031 - yaaU HEPCGN_08865 0.14 -0.1 516,093 + yaaU HEPCGN_08865 0.19 -0.0 516,140 + yaaU HEPCGN_08865 0.23 -0.3 516,161 - yaaU HEPCGN_08865 0.24 -0.3 516,282 + yaaU HEPCGN_08865 0.33 -0.8 516,307 - yaaU HEPCGN_08865 0.35 -0.2 516,554 - yaaU HEPCGN_08865 0.54 -0.5 516,568 + yaaU HEPCGN_08865 0.55 -0.7 516,674 + yaaU HEPCGN_08865 0.63 +1.3 516,674 + yaaU HEPCGN_08865 0.63 +0.3 516,716 + yaaU HEPCGN_08865 0.66 +0.7 516,717 - yaaU HEPCGN_08865 0.66 +0.4 516,826 - yaaU HEPCGN_08865 0.74 -1.0 516,945 + yaaU HEPCGN_08865 0.83 -0.0 516,945 + yaaU HEPCGN_08865 0.83 -1.0 516,947 + yaaU HEPCGN_08865 0.83 +0.2 516,948 - yaaU HEPCGN_08865 0.83 -0.2 517,077 - -0.3 517,129 - -0.5 517,175 + +0.4 517,373 + fixX HEPCGN_08870 0.50 +0.1 517,373 + fixX HEPCGN_08870 0.50 +0.2 517,670 + fixX HEPCGN_08875 0.12 +0.1 517,701 + fixX HEPCGN_08875 0.15 -0.4 517,712 - fixX HEPCGN_08875 0.16 +1.1 517,756 + fixX HEPCGN_08875 0.19 -0.2 517,775 + fixX HEPCGN_08875 0.20 +0.5 517,862 + fixX HEPCGN_08875 0.27 +0.2 517,862 + fixX HEPCGN_08875 0.27 -0.6 517,959 + fixX HEPCGN_08875 0.35 -0.8 517,972 + fixX HEPCGN_08875 0.36 -0.1 517,973 - fixX HEPCGN_08875 0.36 +1.5 518,105 + fixX HEPCGN_08875 0.46 +0.2 518,105 + fixX HEPCGN_08875 0.46 -0.1 518,117 + fixX HEPCGN_08875 0.47 +0.3 518,117 + fixX HEPCGN_08875 0.47 +1.0
Or see this region's nucleotide sequence