Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04245 and HEPCGN_04250 are separated by 554 nucleotides HEPCGN_04250 and HEPCGN_04255 overlap by 1 nucleotides
HEPCGN_04245: HEPCGN_04245 - DNA-invertase, at 744,890 to 745,489
_04245
HEPCGN_04250: HEPCGN_04250 - phage tail protein, at 746,044 to 746,655
_04250
HEPCGN_04255: HEPCGN_04255 - phage tail protein, at 746,655 to 748,250
_04255
Position (kb) 746
747 Strain fitness (log2 ratio) -2
-1
0
1 at 745.123 kb on + strand, within HEPCGN_04245 at 745.123 kb on + strand, within HEPCGN_04245 at 745.124 kb on - strand, within HEPCGN_04245 at 745.136 kb on + strand, within HEPCGN_04245 at 745.261 kb on + strand, within HEPCGN_04245 at 745.322 kb on - strand, within HEPCGN_04245 at 745.334 kb on + strand, within HEPCGN_04245 at 745.519 kb on + strand at 745.523 kb on + strand at 745.828 kb on - strand at 745.837 kb on + strand at 745.886 kb on - strand at 745.887 kb on + strand at 745.965 kb on + strand at 746.013 kb on + strand at 746.014 kb on - strand at 746.036 kb on - strand at 746.122 kb on + strand, within HEPCGN_04250 at 746.123 kb on - strand, within HEPCGN_04250 at 746.123 kb on - strand, within HEPCGN_04250 at 746.123 kb on - strand, within HEPCGN_04250 at 746.125 kb on - strand, within HEPCGN_04250 at 746.125 kb on - strand, within HEPCGN_04250 at 746.126 kb on + strand, within HEPCGN_04250 at 746.126 kb on + strand, within HEPCGN_04250 at 746.127 kb on - strand, within HEPCGN_04250 at 746.207 kb on - strand, within HEPCGN_04250 at 746.260 kb on + strand, within HEPCGN_04250 at 746.278 kb on + strand, within HEPCGN_04250 at 746.278 kb on + strand, within HEPCGN_04250 at 746.279 kb on - strand, within HEPCGN_04250 at 746.279 kb on - strand, within HEPCGN_04250 at 746.286 kb on + strand, within HEPCGN_04250 at 746.407 kb on - strand, within HEPCGN_04250 at 746.439 kb on - strand, within HEPCGN_04250 at 746.507 kb on - strand, within HEPCGN_04250 at 746.566 kb on - strand, within HEPCGN_04250 at 746.588 kb on + strand, within HEPCGN_04250 at 746.588 kb on + strand, within HEPCGN_04250 at 746.589 kb on - strand, within HEPCGN_04250 at 746.589 kb on - strand, within HEPCGN_04250 at 746.593 kb on - strand, within HEPCGN_04250 at 746.595 kb on - strand at 746.673 kb on - strand at 746.675 kb on - strand at 746.753 kb on + strand at 746.855 kb on + strand, within HEPCGN_04255 at 746.858 kb on + strand, within HEPCGN_04255 at 746.896 kb on - strand, within HEPCGN_04255 at 746.958 kb on + strand, within HEPCGN_04255 at 747.122 kb on - strand, within HEPCGN_04255 at 747.381 kb on + strand, within HEPCGN_04255 at 747.435 kb on - strand, within HEPCGN_04255 at 747.435 kb on - strand, within HEPCGN_04255 at 747.438 kb on - strand, within HEPCGN_04255 at 747.562 kb on + strand, within HEPCGN_04255 at 747.581 kb on + strand, within HEPCGN_04255 at 747.609 kb on - strand, within HEPCGN_04255 at 747.631 kb on + strand, within HEPCGN_04255 at 747.652 kb on + strand, within HEPCGN_04255 at 747.652 kb on + strand, within HEPCGN_04255
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 745,123 + HEPCGN_04245 0.39 -0.3 745,123 + HEPCGN_04245 0.39 +0.8 745,124 - HEPCGN_04245 0.39 +0.4 745,136 + HEPCGN_04245 0.41 +1.0 745,261 + HEPCGN_04245 0.62 -0.3 745,322 - HEPCGN_04245 0.72 -0.9 745,334 + HEPCGN_04245 0.74 -0.8 745,519 + -2.3 745,523 + +1.1 745,828 - -0.5 745,837 + +0.0 745,886 - +0.6 745,887 + -0.5 745,965 + +0.2 746,013 + +0.3 746,014 - +0.1 746,036 - +0.1 746,122 + HEPCGN_04250 0.13 +0.5 746,123 - HEPCGN_04250 0.13 +0.0 746,123 - HEPCGN_04250 0.13 +0.6 746,123 - HEPCGN_04250 0.13 +0.4 746,125 - HEPCGN_04250 0.13 -1.2 746,125 - HEPCGN_04250 0.13 +0.3 746,126 + HEPCGN_04250 0.13 +0.9 746,126 + HEPCGN_04250 0.13 +0.3 746,127 - HEPCGN_04250 0.14 +0.1 746,207 - HEPCGN_04250 0.27 +0.1 746,260 + HEPCGN_04250 0.35 -1.1 746,278 + HEPCGN_04250 0.38 -0.6 746,278 + HEPCGN_04250 0.38 +0.1 746,279 - HEPCGN_04250 0.38 -1.4 746,279 - HEPCGN_04250 0.38 -0.2 746,286 + HEPCGN_04250 0.40 -1.2 746,407 - HEPCGN_04250 0.59 +0.5 746,439 - HEPCGN_04250 0.65 +0.2 746,507 - HEPCGN_04250 0.76 +0.5 746,566 - HEPCGN_04250 0.85 +0.1 746,588 + HEPCGN_04250 0.89 +0.2 746,588 + HEPCGN_04250 0.89 +0.2 746,589 - HEPCGN_04250 0.89 -0.4 746,589 - HEPCGN_04250 0.89 +0.4 746,593 - HEPCGN_04250 0.90 -1.5 746,595 - +0.1 746,673 - +0.2 746,675 - +0.6 746,753 + +1.2 746,855 + HEPCGN_04255 0.13 +1.1 746,858 + HEPCGN_04255 0.13 +0.1 746,896 - HEPCGN_04255 0.15 +0.6 746,958 + HEPCGN_04255 0.19 -0.2 747,122 - HEPCGN_04255 0.29 +0.2 747,381 + HEPCGN_04255 0.45 +0.5 747,435 - HEPCGN_04255 0.49 +0.0 747,435 - HEPCGN_04255 0.49 +0.3 747,438 - HEPCGN_04255 0.49 +0.6 747,562 + HEPCGN_04255 0.57 -0.6 747,581 + HEPCGN_04255 0.58 +0.2 747,609 - HEPCGN_04255 0.60 +0.1 747,631 + HEPCGN_04255 0.61 -0.4 747,652 + HEPCGN_04255 0.62 +0.6 747,652 + HEPCGN_04255 0.62 -0.2
Or see this region's nucleotide sequence