Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02455 and HEPCGN_02460 are separated by 75 nucleotides HEPCGN_02460 and HEPCGN_02465 are separated by 4 nucleotides HEPCGN_02465 and HEPCGN_02470 are separated by 95 nucleotides HEPCGN_02470 and HEPCGN_02475 are separated by 36 nucleotides HEPCGN_02475 and HEPCGN_02480 are separated by 221 nucleotides HEPCGN_02480 and HEPCGN_02485 are separated by 1 nucleotides
HEPCGN_02455: HEPCGN_02455 - DUF826 domain-containing protein, at 399,299 to 399,568
_02455
HEPCGN_02460: HEPCGN_02460 - holin, at 399,644 to 399,859
_02460
HEPCGN_02465: HEPCGN_02465 - Phage protein, at 399,864 to 400,352
_02465
HEPCGN_02470: HEPCGN_02470 - DUF1327 domain-containing protein, at 400,448 to 400,852
_02470
HEPCGN_02475: HEPCGN_02475 - SAR-endolysin, at 400,889 to 401,422
_02475
HEPCGN_02480: HEPCGN_02480 - Membrane protein, at 401,644 to 401,757
_02480
HEPCGN_02485: HEPCGN_02485 - lysis protein, at 401,759 to 402,226
_02485
Position (kb) 400
401 Strain fitness (log2 ratio) -1
0
1 at 399.529 kb on + strand, within HEPCGN_02455 at 399.566 kb on + strand at 399.567 kb on - strand at 399.567 kb on - strand at 399.567 kb on - strand at 399.644 kb on - strand at 399.644 kb on - strand at 399.902 kb on + strand at 399.903 kb on - strand at 399.903 kb on - strand at 399.920 kb on + strand, within HEPCGN_02465 at 399.984 kb on - strand, within HEPCGN_02465 at 400.020 kb on + strand, within HEPCGN_02465 at 400.149 kb on + strand, within HEPCGN_02465 at 400.175 kb on + strand, within HEPCGN_02465 at 400.328 kb on + strand at 400.328 kb on + strand at 400.351 kb on - strand at 400.557 kb on + strand, within HEPCGN_02470 at 400.557 kb on + strand, within HEPCGN_02470 at 400.582 kb on - strand, within HEPCGN_02470 at 400.649 kb on - strand, within HEPCGN_02470 at 400.739 kb on - strand, within HEPCGN_02470 at 400.833 kb on - strand at 400.846 kb on + strand at 400.876 kb on - strand at 400.879 kb on + strand at 400.879 kb on + strand at 400.880 kb on - strand at 400.882 kb on + strand at 400.884 kb on + strand at 401.269 kb on + strand, within HEPCGN_02475 at 401.354 kb on - strand, within HEPCGN_02475 at 401.420 kb on + strand at 401.581 kb on + strand at 401.581 kb on + strand at 401.582 kb on - strand at 401.685 kb on - strand, within HEPCGN_02480 at 401.712 kb on + strand, within HEPCGN_02480 at 401.712 kb on + strand, within HEPCGN_02480 at 401.717 kb on + strand, within HEPCGN_02480
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 399,529 + HEPCGN_02455 0.85 -0.2 399,566 + +1.0 399,567 - -1.7 399,567 - +0.0 399,567 - +1.0 399,644 - +0.7 399,644 - +0.3 399,902 + +0.9 399,903 - +1.0 399,903 - -0.8 399,920 + HEPCGN_02465 0.11 -0.2 399,984 - HEPCGN_02465 0.25 -0.3 400,020 + HEPCGN_02465 0.32 +0.2 400,149 + HEPCGN_02465 0.58 +0.5 400,175 + HEPCGN_02465 0.64 -0.4 400,328 + -0.4 400,328 + -0.6 400,351 - +0.1 400,557 + HEPCGN_02470 0.27 +0.2 400,557 + HEPCGN_02470 0.27 +0.7 400,582 - HEPCGN_02470 0.33 +0.1 400,649 - HEPCGN_02470 0.50 +0.8 400,739 - HEPCGN_02470 0.72 +1.5 400,833 - -0.8 400,846 + +1.2 400,876 - -0.0 400,879 + +0.7 400,879 + -0.7 400,880 - +0.1 400,882 + -0.2 400,884 + -1.7 401,269 + HEPCGN_02475 0.71 +1.3 401,354 - HEPCGN_02475 0.87 -0.1 401,420 + +0.3 401,581 + -0.3 401,581 + +0.0 401,582 - +0.1 401,685 - HEPCGN_02480 0.36 +0.2 401,712 + HEPCGN_02480 0.60 +0.2 401,712 + HEPCGN_02480 0.60 -0.2 401,717 + HEPCGN_02480 0.64 +0.7
Or see this region's nucleotide sequence