Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaB and HEPCGN_02400 overlap by 4 nucleotides HEPCGN_02400 and HEPCGN_02405 are separated by 52 nucleotides HEPCGN_02405 and quuD are separated by 17 nucleotides quuD and ompC are separated by 187 nucleotides
HEPCGN_02395: dnaB - helicase, at 390,329 to 391,729
dnaB
HEPCGN_02400: HEPCGN_02400 - hypothetical protein, at 391,726 to 391,983
_02400
HEPCGN_02405: HEPCGN_02405 - DUF968 domain-containing protein, at 392,036 to 393,025
_02405
HEPCGN_02410: quuD - antitermination protein QuuD, at 393,043 to 393,426
quuD
HEPCGN_02415: ompC - phosphoporin PhoE, at 393,614 to 394,696
ompC
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1 at 391.057 kb on + strand, within dnaB at 391.057 kb on + strand, within dnaB at 391.057 kb on + strand, within dnaB at 391.058 kb on - strand, within dnaB at 391.058 kb on - strand, within dnaB at 391.171 kb on + strand, within dnaB at 391.345 kb on + strand, within dnaB at 391.512 kb on - strand, within dnaB at 391.830 kb on + strand, within HEPCGN_02400 at 391.849 kb on - strand, within HEPCGN_02400 at 391.974 kb on + strand at 392.735 kb on - strand, within HEPCGN_02405 at 392.869 kb on + strand, within HEPCGN_02405 at 392.958 kb on - strand at 393.052 kb on - strand at 393.257 kb on + strand, within quuD at 393.266 kb on - strand, within quuD at 393.269 kb on + strand, within quuD at 393.269 kb on + strand, within quuD at 393.269 kb on + strand, within quuD at 393.270 kb on - strand, within quuD at 393.301 kb on - strand, within quuD at 393.322 kb on + strand, within quuD at 393.381 kb on - strand, within quuD at 393.491 kb on + strand at 393.491 kb on + strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.493 kb on + strand at 393.495 kb on + strand at 393.507 kb on + strand at 393.508 kb on - strand at 393.511 kb on + strand at 393.511 kb on + strand at 393.512 kb on - strand at 393.514 kb on + strand at 393.563 kb on - strand at 393.563 kb on - strand at 393.564 kb on + strand at 393.594 kb on + strand at 393.635 kb on + strand at 393.742 kb on - strand, within ompC at 393.773 kb on + strand, within ompC at 393.774 kb on - strand, within ompC at 393.805 kb on + strand, within ompC at 393.823 kb on - strand, within ompC at 393.823 kb on - strand, within ompC at 393.823 kb on - strand, within ompC at 393.858 kb on + strand, within ompC at 393.859 kb on - strand, within ompC at 393.904 kb on + strand, within ompC at 393.939 kb on + strand, within ompC at 393.973 kb on - strand, within ompC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 391,057 + dnaB HEPCGN_02395 0.52 +0.9 391,057 + dnaB HEPCGN_02395 0.52 -1.0 391,057 + dnaB HEPCGN_02395 0.52 -0.1 391,058 - dnaB HEPCGN_02395 0.52 +0.5 391,058 - dnaB HEPCGN_02395 0.52 -0.0 391,171 + dnaB HEPCGN_02395 0.60 +0.5 391,345 + dnaB HEPCGN_02395 0.73 -0.0 391,512 - dnaB HEPCGN_02395 0.84 +1.2 391,830 + HEPCGN_02400 0.40 -0.2 391,849 - HEPCGN_02400 0.48 +1.1 391,974 + +0.6 392,735 - HEPCGN_02405 0.71 +0.6 392,869 + HEPCGN_02405 0.84 +0.4 392,958 - +1.2 393,052 - +0.0 393,257 + quuD HEPCGN_02410 0.56 -0.1 393,266 - quuD HEPCGN_02410 0.58 +1.0 393,269 + quuD HEPCGN_02410 0.59 -0.7 393,269 + quuD HEPCGN_02410 0.59 +0.1 393,269 + quuD HEPCGN_02410 0.59 -0.0 393,270 - quuD HEPCGN_02410 0.59 -0.2 393,301 - quuD HEPCGN_02410 0.67 -0.7 393,322 + quuD HEPCGN_02410 0.73 -0.0 393,381 - quuD HEPCGN_02410 0.88 +0.1 393,491 + -0.1 393,491 + +0.1 393,492 - -2.6 393,492 - +0.1 393,493 + +0.6 393,495 + +0.4 393,507 + +0.4 393,508 - -0.2 393,511 + -0.1 393,511 + +0.2 393,512 - -0.4 393,514 + +0.3 393,563 - -0.4 393,563 - +0.3 393,564 + +0.2 393,594 + +0.1 393,635 + -0.1 393,742 - ompC HEPCGN_02415 0.12 +0.2 393,773 + ompC HEPCGN_02415 0.15 +0.1 393,774 - ompC HEPCGN_02415 0.15 +0.4 393,805 + ompC HEPCGN_02415 0.18 -0.3 393,823 - ompC HEPCGN_02415 0.19 -2.1 393,823 - ompC HEPCGN_02415 0.19 +0.7 393,823 - ompC HEPCGN_02415 0.19 +1.2 393,858 + ompC HEPCGN_02415 0.23 +0.1 393,859 - ompC HEPCGN_02415 0.23 +1.1 393,904 + ompC HEPCGN_02415 0.27 +0.4 393,939 + ompC HEPCGN_02415 0.30 +1.4 393,973 - ompC HEPCGN_02415 0.33 -0.1
Or see this region's nucleotide sequence