Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zitB and ybgS are separated by 113 nucleotides ybgS and aroG are separated by 315 nucleotides aroG and gpmA are separated by 166 nucleotides
HEPCGN_01525: zitB - CDF family zinc transporter ZitB, at 228,100 to 229,041
zitB
HEPCGN_01530: ybgS - Uncharacterized protein YbgS, at 229,155 to 229,535
ybgS
HEPCGN_01535: aroG - 3-deoxy-7-phosphoheptulonate synthase AroG, at 229,851 to 230,903
aroG
HEPCGN_01540: gpmA - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 231,070 to 231,822
gpmA
Position (kb) 229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 228.882 kb on + strand, within zitB at 228.882 kb on + strand, within zitB at 228.882 kb on + strand, within zitB at 228.883 kb on - strand, within zitB at 228.940 kb on + strand, within zitB at 228.993 kb on + strand at 228.993 kb on + strand at 228.994 kb on - strand at 228.996 kb on + strand at 228.996 kb on + strand at 228.996 kb on + strand at 229.076 kb on + strand at 229.086 kb on + strand at 229.096 kb on - strand at 229.096 kb on - strand at 229.136 kb on + strand at 229.224 kb on - strand, within ybgS at 229.230 kb on - strand, within ybgS at 229.368 kb on - strand, within ybgS at 229.492 kb on - strand, within ybgS at 229.492 kb on - strand, within ybgS at 229.549 kb on + strand at 229.558 kb on + strand at 229.559 kb on - strand at 229.559 kb on - strand at 229.559 kb on - strand at 229.599 kb on + strand at 229.599 kb on + strand at 229.600 kb on - strand at 229.600 kb on - strand at 229.600 kb on - strand at 229.600 kb on - strand at 229.600 kb on - strand at 229.600 kb on - strand at 229.601 kb on + strand at 229.601 kb on + strand at 229.602 kb on - strand at 229.658 kb on + strand at 229.678 kb on + strand at 229.678 kb on + strand at 229.766 kb on - strand at 229.810 kb on - strand at 229.830 kb on + strand at 229.830 kb on + strand at 229.831 kb on - strand at 229.874 kb on - strand at 229.982 kb on + strand, within aroG at 230.058 kb on - strand, within aroG at 230.223 kb on - strand, within aroG at 230.246 kb on + strand, within aroG at 230.345 kb on + strand, within aroG at 230.345 kb on + strand, within aroG at 230.346 kb on - strand, within aroG at 230.429 kb on + strand, within aroG at 230.451 kb on - strand, within aroG at 230.568 kb on - strand, within aroG at 230.572 kb on - strand, within aroG at 230.657 kb on + strand, within aroG at 230.658 kb on - strand, within aroG at 230.658 kb on - strand, within aroG at 230.809 kb on - strand at 230.864 kb on - strand at 230.885 kb on - strand at 230.885 kb on - strand at 231.137 kb on + strand at 231.243 kb on - strand, within gpmA at 231.259 kb on + strand, within gpmA at 231.657 kb on - strand, within gpmA at 231.696 kb on + strand, within gpmA at 231.746 kb on + strand, within gpmA at 231.810 kb on + strand at 231.811 kb on - strand at 231.822 kb on + strand at 231.823 kb on - strand at 231.824 kb on + strand at 231.824 kb on + strand at 231.824 kb on + strand at 231.824 kb on + strand at 231.824 kb on + strand at 231.824 kb on + strand at 231.825 kb on - strand at 231.825 kb on - strand at 231.825 kb on - strand at 231.828 kb on + strand at 231.829 kb on - strand at 231.829 kb on - strand at 231.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 228,882 + zitB HEPCGN_01525 0.83 -0.2 228,882 + zitB HEPCGN_01525 0.83 +1.3 228,882 + zitB HEPCGN_01525 0.83 +0.2 228,883 - zitB HEPCGN_01525 0.83 +0.2 228,940 + zitB HEPCGN_01525 0.89 -0.2 228,993 + +0.2 228,993 + -1.2 228,994 - -0.5 228,996 + -0.4 228,996 + -1.8 228,996 + -0.1 229,076 + +0.2 229,086 + -0.0 229,096 - +0.5 229,096 - -0.6 229,136 + -0.4 229,224 - ybgS HEPCGN_01530 0.18 +0.7 229,230 - ybgS HEPCGN_01530 0.20 +0.3 229,368 - ybgS HEPCGN_01530 0.56 +0.2 229,492 - ybgS HEPCGN_01530 0.88 -0.1 229,492 - ybgS HEPCGN_01530 0.88 +0.3 229,549 + +0.1 229,558 + -0.1 229,559 - -0.8 229,559 - +0.9 229,559 - -0.3 229,599 + +2.1 229,599 + +0.3 229,600 - -0.2 229,600 - +0.3 229,600 - -0.4 229,600 - -0.1 229,600 - -0.7 229,600 - +0.0 229,601 + +0.3 229,601 + +1.3 229,602 - +0.1 229,658 + +1.1 229,678 + -0.1 229,678 + -1.2 229,766 - +0.4 229,810 - -0.3 229,830 + -0.8 229,830 + +0.2 229,831 - -0.4 229,874 - -1.4 229,982 + aroG HEPCGN_01535 0.12 -1.6 230,058 - aroG HEPCGN_01535 0.20 -0.1 230,223 - aroG HEPCGN_01535 0.35 +0.3 230,246 + aroG HEPCGN_01535 0.38 +0.1 230,345 + aroG HEPCGN_01535 0.47 -0.1 230,345 + aroG HEPCGN_01535 0.47 -0.2 230,346 - aroG HEPCGN_01535 0.47 +0.2 230,429 + aroG HEPCGN_01535 0.55 +0.1 230,451 - aroG HEPCGN_01535 0.57 -0.7 230,568 - aroG HEPCGN_01535 0.68 -0.4 230,572 - aroG HEPCGN_01535 0.68 -0.7 230,657 + aroG HEPCGN_01535 0.77 +0.3 230,658 - aroG HEPCGN_01535 0.77 +0.5 230,658 - aroG HEPCGN_01535 0.77 +0.4 230,809 - +0.2 230,864 - -0.2 230,885 - -0.6 230,885 - +0.1 231,137 + +0.1 231,243 - gpmA HEPCGN_01540 0.23 +0.2 231,259 + gpmA HEPCGN_01540 0.25 -2.2 231,657 - gpmA HEPCGN_01540 0.78 +0.9 231,696 + gpmA HEPCGN_01540 0.83 -0.6 231,746 + gpmA HEPCGN_01540 0.90 +0.2 231,810 + -3.5 231,811 - +0.7 231,822 + -0.5 231,823 - -0.4 231,824 + -0.3 231,824 + -0.3 231,824 + +0.1 231,824 + -0.4 231,824 + +0.3 231,824 + -0.1 231,825 - +0.7 231,825 - -0.6 231,825 - +0.7 231,828 + +2.0 231,829 - +0.4 231,829 - -0.7 231,856 + -0.7
Or see this region's nucleotide sequence