Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00210 and HEPCGN_00215 overlap by 4 nucleotides HEPCGN_00215 and HEPCGN_00220 are separated by 639 nucleotides HEPCGN_00220 and HEPCGN_00225 are separated by 104 nucleotides HEPCGN_00225 and HEPCGN_00230 overlap by 4 nucleotides HEPCGN_00230 and HEPCGN_00235 overlap by 14 nucleotides
HEPCGN_00210: HEPCGN_00210 - addiction module killer protein, at 12,331 to 12,666
_00210
HEPCGN_00215: HEPCGN_00215 - DNA-binding protein, at 12,663 to 13,013
_00215
HEPCGN_00220: HEPCGN_00220 - molecular chaperone DnaJ, at 13,653 to 14,168
_00220
HEPCGN_00225: HEPCGN_00225 - hypothetical protein, at 14,273 to 14,815
_00225
HEPCGN_00230: HEPCGN_00230 - hypothetical protein, at 14,812 to 15,063
_00230
HEPCGN_00235: HEPCGN_00235 - XRE family transcriptional regulator, at 15,050 to 15,277
_00235
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.847 kb on + strand, within HEPCGN_00215 at 12.965 kb on + strand, within HEPCGN_00215 at 12.965 kb on + strand, within HEPCGN_00215 at 12.965 kb on + strand, within HEPCGN_00215 at 12.999 kb on - strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.012 kb on - strand at 13.066 kb on + strand at 13.067 kb on - strand at 13.092 kb on + strand at 13.107 kb on - strand at 13.144 kb on - strand at 13.168 kb on + strand at 13.169 kb on - strand at 13.169 kb on - strand at 13.181 kb on + strand at 13.182 kb on - strand at 13.187 kb on + strand at 13.188 kb on - strand at 13.188 kb on - strand at 13.188 kb on - strand at 13.192 kb on + strand at 13.192 kb on + strand at 13.192 kb on + strand at 13.192 kb on + strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.198 kb on + strand at 13.198 kb on + strand at 13.198 kb on + strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.204 kb on - strand at 13.204 kb on - strand at 13.204 kb on - strand at 13.204 kb on - strand at 13.210 kb on - strand at 13.214 kb on + strand at 13.699 kb on + strand at 13.810 kb on + strand, within HEPCGN_00220 at 13.810 kb on + strand, within HEPCGN_00220 at 13.823 kb on + strand, within HEPCGN_00220 at 13.872 kb on - strand, within HEPCGN_00220 at 13.897 kb on + strand, within HEPCGN_00220 at 14.196 kb on - strand at 14.198 kb on + strand at 14.198 kb on + strand at 14.201 kb on - strand at 14.251 kb on + strand at 14.251 kb on + strand at 14.252 kb on - strand at 14.252 kb on - strand at 14.295 kb on - strand at 14.295 kb on - strand at 14.417 kb on - strand, within HEPCGN_00225 at 14.641 kb on + strand, within HEPCGN_00225 at 14.647 kb on - strand, within HEPCGN_00225 at 14.773 kb on - strand at 14.938 kb on + strand, within HEPCGN_00230 at 14.939 kb on - strand, within HEPCGN_00230
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 12,847 + HEPCGN_00215 0.52 -0.1 12,965 + HEPCGN_00215 0.86 +0.1 12,965 + HEPCGN_00215 0.86 -1.5 12,965 + HEPCGN_00215 0.86 -1.4 12,999 - -0.2 13,011 + +0.7 13,011 + +0.4 13,011 + -0.2 13,011 + -0.1 13,011 + -0.3 13,012 - -1.4 13,066 + -1.1 13,067 - +0.8 13,092 + +0.7 13,107 - -1.1 13,144 - -0.4 13,168 + +0.6 13,169 - +1.9 13,169 - -0.3 13,181 + +0.8 13,182 - +0.2 13,187 + +0.2 13,188 - +0.4 13,188 - +0.5 13,188 - +0.8 13,192 + -0.4 13,192 + -0.3 13,192 + +2.4 13,192 + -0.6 13,193 - +0.9 13,193 - +1.1 13,193 - -0.1 13,193 - -0.3 13,193 - +0.3 13,193 - +0.1 13,198 + -0.5 13,198 + +0.8 13,198 + +0.8 13,199 - -0.2 13,199 - -0.4 13,199 - -0.1 13,199 - -1.7 13,199 - -1.6 13,203 + -2.2 13,203 + +0.5 13,203 + -1.0 13,203 + +0.8 13,203 + +0.4 13,204 - -0.8 13,204 - -1.2 13,204 - +0.9 13,204 - +0.6 13,210 - -0.4 13,214 + +0.2 13,699 + -1.0 13,810 + HEPCGN_00220 0.30 +0.4 13,810 + HEPCGN_00220 0.30 +0.1 13,823 + HEPCGN_00220 0.33 +0.4 13,872 - HEPCGN_00220 0.42 +0.5 13,897 + HEPCGN_00220 0.47 +0.1 14,196 - -0.2 14,198 + -0.3 14,198 + +0.2 14,201 - +0.4 14,251 + -0.8 14,251 + -1.0 14,252 - +0.1 14,252 - +2.4 14,295 - +0.7 14,295 - +0.2 14,417 - HEPCGN_00225 0.27 +0.1 14,641 + HEPCGN_00225 0.68 -0.2 14,647 - HEPCGN_00225 0.69 -0.1 14,773 - +0.4 14,938 + HEPCGN_00230 0.50 -0.5 14,939 - HEPCGN_00230 0.50 -1.8
Or see this region's nucleotide sequence