Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16640

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11690 and A4249_RS16640 are separated by 483 nucleotidesA4249_RS16640 and A4249_RS11710 are separated by 64 nucleotides A4249_RS11690: A4249_RS11690 - endonuclease III domain-containing protein, at 2,347,094 to 2,348,002 _RS11690 A4249_RS16640: A4249_RS16640 - lasso peptide biosynthesis B2 protein, at 2,348,486 to 2,349,580 _RS16640 A4249_RS11710: A4249_RS11710 - hypothetical protein, at 2,349,645 to 2,350,601 _RS11710 Position (kb) 2348 2349 2350Strain fitness (log2 ratio) -2 -1 0 1 2at 2347.526 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.608 kb on - strand, within A4249_RS11690at 2347.608 kb on - strand, within A4249_RS11690at 2347.611 kb on + strand, within A4249_RS11690at 2347.611 kb on + strand, within A4249_RS11690at 2347.611 kb on + strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.659 kb on - strand, within A4249_RS11690at 2347.659 kb on - strand, within A4249_RS11690at 2348.020 kb on - strandat 2348.020 kb on - strandat 2348.036 kb on - strandat 2348.066 kb on + strandat 2348.066 kb on + strandat 2348.066 kb on + strandat 2348.066 kb on + strandat 2348.066 kb on + strandat 2348.067 kb on - strandat 2348.067 kb on - strandat 2348.085 kb on - strandat 2348.085 kb on - strandat 2348.165 kb on + strandat 2348.165 kb on + strandat 2348.166 kb on - strandat 2348.309 kb on + strandat 2348.310 kb on - strandat 2348.352 kb on + strandat 2348.353 kb on - strandat 2348.367 kb on + strandat 2348.368 kb on - strandat 2348.431 kb on + strandat 2348.431 kb on + strandat 2348.432 kb on - strandat 2348.432 kb on - strandat 2348.432 kb on - strandat 2348.432 kb on - strandat 2348.442 kb on + strandat 2348.443 kb on - strandat 2348.443 kb on - strandat 2348.700 kb on - strand, within A4249_RS16640at 2348.759 kb on + strand, within A4249_RS16640at 2348.760 kb on - strand, within A4249_RS16640at 2348.778 kb on + strand, within A4249_RS16640at 2348.778 kb on + strand, within A4249_RS16640at 2348.779 kb on - strand, within A4249_RS16640at 2348.817 kb on + strand, within A4249_RS16640at 2348.818 kb on - strand, within A4249_RS16640at 2349.029 kb on + strand, within A4249_RS16640at 2349.029 kb on + strand, within A4249_RS16640at 2349.029 kb on + strand, within A4249_RS16640at 2349.030 kb on - strand, within A4249_RS16640at 2349.030 kb on - strand, within A4249_RS16640at 2349.030 kb on - strand, within A4249_RS16640at 2349.030 kb on - strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.060 kb on + strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.061 kb on - strand, within A4249_RS16640at 2349.080 kb on - strand, within A4249_RS16640at 2349.557 kb on + strandat 2349.557 kb on + strandat 2349.557 kb on + strandat 2349.558 kb on - strandat 2349.558 kb on - strandat 2349.558 kb on - strandat 2349.558 kb on - strandat 2349.558 kb on - strandat 2349.870 kb on + strand, within A4249_RS11710at 2349.870 kb on + strand, within A4249_RS11710at 2349.870 kb on + strand, within A4249_RS11710at 2349.871 kb on - strand, within A4249_RS11710at 2349.871 kb on - strand, within A4249_RS11710at 2349.871 kb on - strand, within A4249_RS11710at 2349.871 kb on - strand, within A4249_RS11710at 2349.871 kb on - strand, within A4249_RS11710at 2350.172 kb on - strand, within A4249_RS11710at 2350.172 kb on - strand, within A4249_RS11710at 2350.306 kb on - strand, within A4249_RS11710at 2350.306 kb on - strand, within A4249_RS11710at 2350.306 kb on - strand, within A4249_RS11710at 2350.306 kb on - strand, within A4249_RS11710at 2350.311 kb on + strand, within A4249_RS11710at 2350.311 kb on + strand, within A4249_RS11710at 2350.311 kb on + strand, within A4249_RS11710at 2350.312 kb on - strand, within A4249_RS11710at 2350.312 kb on - strand, within A4249_RS11710at 2350.312 kb on - strand, within A4249_RS11710at 2350.372 kb on - strand, within A4249_RS11710at 2350.372 kb on - strand, within A4249_RS11710at 2350.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,347,526 + A4249_RS11690 0.48 +0.8
2,347,607 + A4249_RS11690 0.56 -0.5
2,347,607 + A4249_RS11690 0.56 -0.0
2,347,607 + A4249_RS11690 0.56 +1.4
2,347,607 + A4249_RS11690 0.56 +1.2
2,347,607 + A4249_RS11690 0.56 -0.4
2,347,608 - A4249_RS11690 0.57 +0.0
2,347,608 - A4249_RS11690 0.57 -1.1
2,347,611 + A4249_RS11690 0.57 +0.1
2,347,611 + A4249_RS11690 0.57 +0.5
2,347,611 + A4249_RS11690 0.57 +1.3
2,347,612 - A4249_RS11690 0.57 +0.6
2,347,612 - A4249_RS11690 0.57 -1.4
2,347,612 - A4249_RS11690 0.57 +0.7
2,347,612 - A4249_RS11690 0.57 +0.1
2,347,612 - A4249_RS11690 0.57 -0.6
2,347,612 - A4249_RS11690 0.57 -0.8
2,347,612 - A4249_RS11690 0.57 -0.0
2,347,659 - A4249_RS11690 0.62 +0.1
2,347,659 - A4249_RS11690 0.62 -0.4
2,348,020 - +1.6
2,348,020 - +1.4
2,348,036 - -0.4
2,348,066 + +0.3
2,348,066 + +0.4
2,348,066 + -0.1
2,348,066 + -1.8
2,348,066 + +0.4
2,348,067 - -0.4
2,348,067 - -1.0
2,348,085 - -0.1
2,348,085 - -1.0
2,348,165 + -0.8
2,348,165 + -0.5
2,348,166 - -1.8
2,348,309 + -0.4
2,348,310 - +0.1
2,348,352 + +0.3
2,348,353 - -0.5
2,348,367 + -0.5
2,348,368 - +0.4
2,348,431 + -0.2
2,348,431 + -0.0
2,348,432 - -0.4
2,348,432 - -0.5
2,348,432 - -0.4
2,348,432 - +1.2
2,348,442 + -0.1
2,348,443 - -1.3
2,348,443 - +0.1
2,348,700 - A4249_RS16640 0.20 +0.8
2,348,759 + A4249_RS16640 0.25 +0.8
2,348,760 - A4249_RS16640 0.25 -0.4
2,348,778 + A4249_RS16640 0.27 -0.1
2,348,778 + A4249_RS16640 0.27 +0.5
2,348,779 - A4249_RS16640 0.27 -0.8
2,348,817 + A4249_RS16640 0.30 +0.7
2,348,818 - A4249_RS16640 0.30 +0.5
2,349,029 + A4249_RS16640 0.50 -0.6
2,349,029 + A4249_RS16640 0.50 -2.1
2,349,029 + A4249_RS16640 0.50 +0.8
2,349,030 - A4249_RS16640 0.50 -1.4
2,349,030 - A4249_RS16640 0.50 +0.2
2,349,030 - A4249_RS16640 0.50 -1.2
2,349,030 - A4249_RS16640 0.50 -1.4
2,349,060 + A4249_RS16640 0.52 -0.2
2,349,060 + A4249_RS16640 0.52 +0.1
2,349,060 + A4249_RS16640 0.52 +0.4
2,349,060 + A4249_RS16640 0.52 -0.8
2,349,060 + A4249_RS16640 0.52 +1.0
2,349,060 + A4249_RS16640 0.52 -0.5
2,349,060 + A4249_RS16640 0.52 +0.5
2,349,060 + A4249_RS16640 0.52 -0.8
2,349,060 + A4249_RS16640 0.52 -0.4
2,349,060 + A4249_RS16640 0.52 -0.2
2,349,060 + A4249_RS16640 0.52 +0.9
2,349,060 + A4249_RS16640 0.52 +0.4
2,349,060 + A4249_RS16640 0.52 +0.8
2,349,061 - A4249_RS16640 0.53 +1.1
2,349,061 - A4249_RS16640 0.53 +0.3
2,349,061 - A4249_RS16640 0.53 -0.0
2,349,061 - A4249_RS16640 0.53 -0.1
2,349,061 - A4249_RS16640 0.53 +0.1
2,349,061 - A4249_RS16640 0.53 -0.0
2,349,061 - A4249_RS16640 0.53 +0.8
2,349,061 - A4249_RS16640 0.53 -0.6
2,349,061 - A4249_RS16640 0.53 +0.2
2,349,061 - A4249_RS16640 0.53 -1.1
2,349,061 - A4249_RS16640 0.53 +0.2
2,349,061 - A4249_RS16640 0.53 +1.6
2,349,061 - A4249_RS16640 0.53 -0.4
2,349,061 - A4249_RS16640 0.53 -1.1
2,349,080 - A4249_RS16640 0.54 +0.0
2,349,557 + -0.4
2,349,557 + +0.4
2,349,557 + -0.4
2,349,558 - -0.1
2,349,558 - -0.2
2,349,558 - +0.4
2,349,558 - -0.6
2,349,558 - -1.2
2,349,870 + A4249_RS11710 0.24 +1.0
2,349,870 + A4249_RS11710 0.24 +0.2
2,349,870 + A4249_RS11710 0.24 +0.2
2,349,871 - A4249_RS11710 0.24 -0.1
2,349,871 - A4249_RS11710 0.24 +0.0
2,349,871 - A4249_RS11710 0.24 -1.4
2,349,871 - A4249_RS11710 0.24 +0.2
2,349,871 - A4249_RS11710 0.24 -0.9
2,350,172 - A4249_RS11710 0.55 -0.2
2,350,172 - A4249_RS11710 0.55 -0.5
2,350,306 - A4249_RS11710 0.69 +0.9
2,350,306 - A4249_RS11710 0.69 -1.3
2,350,306 - A4249_RS11710 0.69 -0.3
2,350,306 - A4249_RS11710 0.69 +1.3
2,350,311 + A4249_RS11710 0.70 -0.9
2,350,311 + A4249_RS11710 0.70 -0.7
2,350,311 + A4249_RS11710 0.70 +2.1
2,350,312 - A4249_RS11710 0.70 +1.2
2,350,312 - A4249_RS11710 0.70 +1.0
2,350,312 - A4249_RS11710 0.70 -0.4
2,350,372 - A4249_RS11710 0.76 -0.4
2,350,372 - A4249_RS11710 0.76 -1.9
2,350,545 - +0.7

Or see this region's nucleotide sequence