Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15270

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15265 and A4249_RS15270 are separated by 106 nucleotidesA4249_RS15270 and A4249_RS15275 are separated by 54 nucleotides A4249_RS15265: A4249_RS15265 - hypothetical protein, at 3,088,856 to 3,090,070 _RS15265 A4249_RS15270: A4249_RS15270 - hypothetical protein, at 3,090,177 to 3,090,521 _RS15270 A4249_RS15275: A4249_RS15275 - peptide chain release factor 3, at 3,090,576 to 3,092,219 _RS15275 Position (kb) 3090 3091Strain fitness (log2 ratio) -1 0 1 2at 3089.372 kb on + strand, within A4249_RS15265at 3089.372 kb on + strand, within A4249_RS15265at 3089.373 kb on - strand, within A4249_RS15265at 3089.373 kb on - strand, within A4249_RS15265at 3089.518 kb on + strand, within A4249_RS15265at 3089.518 kb on + strand, within A4249_RS15265at 3089.519 kb on - strand, within A4249_RS15265at 3090.166 kb on - strandat 3090.166 kb on - strandat 3090.178 kb on + strandat 3090.179 kb on - strandat 3090.179 kb on - strandat 3090.179 kb on - strandat 3090.179 kb on - strandat 3090.349 kb on + strand, within A4249_RS15270at 3090.350 kb on - strand, within A4249_RS15270at 3090.350 kb on - strand, within A4249_RS15270at 3090.350 kb on - strand, within A4249_RS15270at 3090.350 kb on - strand, within A4249_RS15270at 3090.364 kb on + strand, within A4249_RS15270at 3090.364 kb on + strand, within A4249_RS15270at 3090.364 kb on + strand, within A4249_RS15270at 3090.365 kb on - strand, within A4249_RS15270at 3090.365 kb on - strand, within A4249_RS15270at 3090.448 kb on + strand, within A4249_RS15270at 3090.449 kb on - strand, within A4249_RS15270at 3090.449 kb on - strand, within A4249_RS15270at 3090.449 kb on - strand, within A4249_RS15270at 3090.485 kb on + strand, within A4249_RS15270at 3090.485 kb on + strand, within A4249_RS15270at 3090.485 kb on + strand, within A4249_RS15270at 3090.485 kb on + strand, within A4249_RS15270at 3090.486 kb on - strand, within A4249_RS15270at 3090.486 kb on - strand, within A4249_RS15270at 3090.486 kb on - strand, within A4249_RS15270at 3090.486 kb on - strand, within A4249_RS15270at 3090.486 kb on - strand, within A4249_RS15270at 3090.631 kb on + strandat 3090.631 kb on + strandat 3090.631 kb on + strandat 3090.631 kb on + strandat 3090.703 kb on + strandat 3090.704 kb on - strandat 3090.704 kb on - strandat 3090.704 kb on - strandat 3090.704 kb on - strandat 3090.808 kb on + strand, within A4249_RS15275at 3090.808 kb on + strand, within A4249_RS15275at 3090.808 kb on + strand, within A4249_RS15275at 3090.809 kb on - strand, within A4249_RS15275at 3090.809 kb on - strand, within A4249_RS15275at 3090.809 kb on - strand, within A4249_RS15275at 3091.139 kb on + strand, within A4249_RS15275at 3091.140 kb on - strand, within A4249_RS15275at 3091.140 kb on - strand, within A4249_RS15275at 3091.221 kb on - strand, within A4249_RS15275at 3091.459 kb on - strand, within A4249_RS15275

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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3,089,372 + A4249_RS15265 0.42 -1.1
3,089,372 + A4249_RS15265 0.42 +0.2
3,089,373 - A4249_RS15265 0.43 -0.1
3,089,373 - A4249_RS15265 0.43 +0.8
3,089,518 + A4249_RS15265 0.54 -0.0
3,089,518 + A4249_RS15265 0.54 +1.1
3,089,519 - A4249_RS15265 0.55 -0.1
3,090,166 - +0.2
3,090,166 - -0.1
3,090,178 + -0.8
3,090,179 - -0.5
3,090,179 - -0.3
3,090,179 - +0.3
3,090,179 - +0.2
3,090,349 + A4249_RS15270 0.50 +0.1
3,090,350 - A4249_RS15270 0.50 -0.4
3,090,350 - A4249_RS15270 0.50 -0.2
3,090,350 - A4249_RS15270 0.50 -0.7
3,090,350 - A4249_RS15270 0.50 +0.2
3,090,364 + A4249_RS15270 0.54 -0.3
3,090,364 + A4249_RS15270 0.54 +0.2
3,090,364 + A4249_RS15270 0.54 +0.5
3,090,365 - A4249_RS15270 0.54 +0.2
3,090,365 - A4249_RS15270 0.54 -0.1
3,090,448 + A4249_RS15270 0.79 -0.7
3,090,449 - A4249_RS15270 0.79 -0.3
3,090,449 - A4249_RS15270 0.79 -0.3
3,090,449 - A4249_RS15270 0.79 +0.7
3,090,485 + A4249_RS15270 0.89 +1.7
3,090,485 + A4249_RS15270 0.89 -0.2
3,090,485 + A4249_RS15270 0.89 +0.5
3,090,485 + A4249_RS15270 0.89 +0.4
3,090,486 - A4249_RS15270 0.90 -1.0
3,090,486 - A4249_RS15270 0.90 +1.2
3,090,486 - A4249_RS15270 0.90 -0.7
3,090,486 - A4249_RS15270 0.90 -0.7
3,090,486 - A4249_RS15270 0.90 -0.2
3,090,631 + +0.0
3,090,631 + +0.5
3,090,631 + -0.2
3,090,631 + +0.4
3,090,703 + -1.4
3,090,704 - +0.0
3,090,704 - +0.3
3,090,704 - +0.2
3,090,704 - +0.7
3,090,808 + A4249_RS15275 0.14 -0.3
3,090,808 + A4249_RS15275 0.14 -0.8
3,090,808 + A4249_RS15275 0.14 +0.0
3,090,809 - A4249_RS15275 0.14 +1.5
3,090,809 - A4249_RS15275 0.14 +1.5
3,090,809 - A4249_RS15275 0.14 +0.9
3,091,139 + A4249_RS15275 0.34 +0.1
3,091,140 - A4249_RS15275 0.34 -0.8
3,091,140 - A4249_RS15275 0.34 +0.0
3,091,221 - A4249_RS15275 0.39 +2.1
3,091,459 - A4249_RS15275 0.54 -0.8

Or see this region's nucleotide sequence