Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12155

Experiment: Guanosine 0.35306 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS12140 and A4249_RS12145 are separated by 77 nucleotidesA4249_RS12145 and A4249_RS12150 overlap by 4 nucleotidesA4249_RS12150 and A4249_RS12155 are separated by 120 nucleotidesA4249_RS12155 and A4249_RS12160 overlap by 4 nucleotides A4249_RS12140: A4249_RS12140 - ATP-binding protein, at 2,438,687 to 2,439,742 _RS12140 A4249_RS12145: A4249_RS12145 - HPr family phosphocarrier protein, at 2,439,820 to 2,440,092 _RS12145 A4249_RS12150: A4249_RS12150 - PTS sugar transporter subunit IIA, at 2,440,089 to 2,440,493 _RS12150 A4249_RS12155: A4249_RS12155 - HPr kinase/phosphatase C-terminal domain-containing protein, at 2,440,614 to 2,441,042 _RS12155 A4249_RS12160: A4249_RS12160 - ATP-binding protein, at 2,441,039 to 2,442,649 _RS12160 Position (kb) 2440 2441 2442Strain fitness (log2 ratio) -2 -1 0 1at 2439.738 kb on + strandat 2439.739 kb on - strandat 2439.739 kb on - strandat 2439.740 kb on + strandat 2439.741 kb on - strandat 2439.741 kb on - strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.129 kb on + strandat 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.130 kb on - strand, within A4249_RS12150at 2440.571 kb on + strandat 2440.571 kb on + strandat 2440.571 kb on + strandat 2440.572 kb on - strandat 2440.594 kb on + strandat 2440.594 kb on + strandat 2440.594 kb on + strandat 2440.595 kb on - strandat 2440.595 kb on - strandat 2440.595 kb on - strandat 2440.595 kb on - strandat 2440.595 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
remove
2,439,738 + +0.5
2,439,739 - -1.6
2,439,739 - +0.8
2,439,740 + +0.3
2,439,741 - -0.9
2,439,741 - -0.2
2,440,129 + -0.1
2,440,129 + +0.1
2,440,129 + +0.2
2,440,129 + +0.2
2,440,129 + +0.2
2,440,129 + +0.4
2,440,129 + -0.3
2,440,129 + -0.7
2,440,129 + -0.4
2,440,129 + -0.3
2,440,129 + +0.3
2,440,129 + +0.0
2,440,129 + +0.5
2,440,130 - A4249_RS12150 0.10 -0.8
2,440,130 - A4249_RS12150 0.10 +0.0
2,440,130 - A4249_RS12150 0.10 -0.1
2,440,130 - A4249_RS12150 0.10 -1.4
2,440,130 - A4249_RS12150 0.10 -0.3
2,440,130 - A4249_RS12150 0.10 -0.3
2,440,130 - A4249_RS12150 0.10 -0.4
2,440,130 - A4249_RS12150 0.10 -1.2
2,440,130 - A4249_RS12150 0.10 +0.0
2,440,130 - A4249_RS12150 0.10 -0.3
2,440,130 - A4249_RS12150 0.10 -0.6
2,440,130 - A4249_RS12150 0.10 -1.8
2,440,130 - A4249_RS12150 0.10 -0.8
2,440,571 + -0.2
2,440,571 + -2.2
2,440,571 + -0.4
2,440,572 - -0.4
2,440,594 + -0.1
2,440,594 + +0.3
2,440,594 + +1.4
2,440,595 - -0.1
2,440,595 - +0.6
2,440,595 - +0.3
2,440,595 - -0.8
2,440,595 - -0.4

Or see this region's nucleotide sequence