Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11720

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11715 and A4249_RS16970 are separated by 443 nucleotidesA4249_RS16970 and A4249_RS11720 are separated by 151 nucleotidesA4249_RS11720 and A4249_RS11725 are separated by 170 nucleotidesA4249_RS11725 and A4249_RS11730 are separated by 115 nucleotides A4249_RS11715: A4249_RS11715 - hypothetical protein, at 2,350,604 to 2,351,641 _RS11715 A4249_RS16970: A4249_RS16970 - hypothetical protein, at 2,352,085 to 2,352,231 _RS16970 A4249_RS11720: A4249_RS11720 - strawberry notch C-terminal domain-containing protein, at 2,352,383 to 2,353,624 _RS11720 A4249_RS11725: A4249_RS11725 - hypothetical protein, at 2,353,795 to 2,354,100 _RS11725 A4249_RS11730: A4249_RS11730 - DUF305 domain-containing protein, at 2,354,216 to 2,354,653 _RS11730 Position (kb) 2352 2353 2354Strain fitness (log2 ratio) -2 -1 0 1 2at 2351.639 kb on + strandat 2351.639 kb on + strandat 2351.640 kb on - strandat 2351.669 kb on + strandat 2351.670 kb on - strandat 2351.670 kb on - strandat 2351.670 kb on - strandat 2351.670 kb on - strandat 2351.670 kb on - strandat 2351.673 kb on + strandat 2351.673 kb on + strandat 2351.673 kb on + strandat 2351.673 kb on + strandat 2351.673 kb on + strandat 2351.673 kb on + strandat 2351.673 kb on + strandat 2351.673 kb on + strandat 2351.673 kb on + strandat 2351.674 kb on - strandat 2351.674 kb on - strandat 2351.674 kb on - strandat 2351.674 kb on - strandat 2351.674 kb on - strandat 2351.674 kb on - strandat 2351.674 kb on - strandat 2351.674 kb on - strandat 2351.683 kb on - strandat 2351.683 kb on - strandat 2351.683 kb on - strandat 2351.683 kb on - strandat 2351.683 kb on - strandat 2351.746 kb on + strandat 2351.746 kb on + strandat 2351.746 kb on + strandat 2351.746 kb on + strandat 2351.746 kb on + strandat 2351.746 kb on + strandat 2351.746 kb on + strandat 2351.746 kb on + strandat 2351.747 kb on - strandat 2351.747 kb on - strandat 2351.747 kb on - strandat 2351.747 kb on - strandat 2351.807 kb on - strandat 2351.858 kb on + strandat 2351.880 kb on + strandat 2351.881 kb on - strandat 2351.883 kb on + strandat 2351.883 kb on + strandat 2351.883 kb on + strandat 2351.883 kb on + strandat 2351.884 kb on - strandat 2351.884 kb on - strandat 2351.884 kb on - strandat 2351.884 kb on - strandat 2351.884 kb on - strandat 2351.884 kb on - strandat 2351.887 kb on + strandat 2351.923 kb on + strandat 2351.923 kb on + strandat 2351.924 kb on - strandat 2352.001 kb on + strandat 2352.001 kb on + strandat 2352.001 kb on + strandat 2352.001 kb on + strandat 2352.001 kb on + strandat 2352.001 kb on + strandat 2352.001 kb on + strandat 2352.001 kb on + strandat 2352.002 kb on - strandat 2352.002 kb on - strandat 2352.002 kb on - strandat 2352.002 kb on - strandat 2352.002 kb on - strandat 2352.002 kb on - strandat 2352.002 kb on - strandat 2352.002 kb on - strandat 2352.005 kb on + strandat 2352.005 kb on + strandat 2352.005 kb on + strandat 2352.005 kb on + strandat 2352.006 kb on - strandat 2352.006 kb on - strandat 2352.006 kb on - strandat 2352.006 kb on - strandat 2352.036 kb on + strandat 2352.036 kb on + strandat 2352.036 kb on + strandat 2352.036 kb on + strandat 2352.036 kb on + strandat 2352.036 kb on + strandat 2352.036 kb on + strandat 2352.036 kb on + strandat 2352.036 kb on + strandat 2352.037 kb on - strandat 2352.041 kb on + strandat 2352.041 kb on + strandat 2352.042 kb on - strandat 2352.042 kb on - strandat 2352.059 kb on + strandat 2352.059 kb on + strandat 2352.059 kb on + strandat 2352.059 kb on + strandat 2352.059 kb on + strandat 2352.060 kb on - strandat 2352.060 kb on - strandat 2352.120 kb on + strand, within A4249_RS16970at 2352.120 kb on + strand, within A4249_RS16970at 2352.120 kb on + strand, within A4249_RS16970at 2352.131 kb on + strand, within A4249_RS16970at 2352.131 kb on + strand, within A4249_RS16970at 2352.131 kb on + strand, within A4249_RS16970at 2352.131 kb on + strand, within A4249_RS16970at 2352.131 kb on + strand, within A4249_RS16970at 2352.131 kb on + strand, within A4249_RS16970at 2352.131 kb on + strand, within A4249_RS16970at 2352.132 kb on - strand, within A4249_RS16970at 2352.132 kb on - strand, within A4249_RS16970at 2352.170 kb on + strand, within A4249_RS16970at 2352.277 kb on - strandat 2352.521 kb on + strand, within A4249_RS11720at 2352.522 kb on - strand, within A4249_RS11720at 2353.523 kb on + strandat 2353.523 kb on + strandat 2353.524 kb on - strandat 2353.524 kb on - strandat 2353.638 kb on + strandat 2353.638 kb on + strandat 2353.638 kb on + strandat 2353.638 kb on + strandat 2353.638 kb on + strandat 2353.638 kb on + strandat 2353.638 kb on + strandat 2353.638 kb on + strandat 2353.639 kb on - strandat 2353.723 kb on + strandat 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.897 kb on + strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.898 kb on - strand, within A4249_RS11725at 2353.955 kb on + strand, within A4249_RS11725at 2353.955 kb on + strand, within A4249_RS11725at 2353.956 kb on - strand, within A4249_RS11725at 2353.956 kb on - strand, within A4249_RS11725at 2353.956 kb on - strand, within A4249_RS11725at 2354.015 kb on + strand, within A4249_RS11725at 2354.016 kb on - strand, within A4249_RS11725at 2354.016 kb on - strand, within A4249_RS11725at 2354.126 kb on + strandat 2354.127 kb on - strandat 2354.128 kb on + strandat 2354.128 kb on + strandat 2354.128 kb on + strandat 2354.128 kb on + strandat 2354.128 kb on + strandat 2354.128 kb on + strandat 2354.129 kb on - strandat 2354.129 kb on - strandat 2354.129 kb on - strandat 2354.129 kb on - strandat 2354.129 kb on - strandat 2354.129 kb on - strandat 2354.129 kb on - strandat 2354.153 kb on + strandat 2354.154 kb on - strandat 2354.154 kb on - strandat 2354.269 kb on + strand, within A4249_RS11730at 2354.270 kb on - strand, within A4249_RS11730at 2354.270 kb on - strand, within A4249_RS11730at 2354.427 kb on + strand, within A4249_RS11730at 2354.427 kb on + strand, within A4249_RS11730at 2354.428 kb on - strand, within A4249_RS11730at 2354.440 kb on + strand, within A4249_RS11730at 2354.441 kb on - strand, within A4249_RS11730at 2354.472 kb on + strand, within A4249_RS11730at 2354.472 kb on + strand, within A4249_RS11730at 2354.472 kb on + strand, within A4249_RS11730at 2354.473 kb on - strand, within A4249_RS11730at 2354.473 kb on - strand, within A4249_RS11730at 2354.473 kb on - strand, within A4249_RS11730at 2354.473 kb on - strand, within A4249_RS11730at 2354.473 kb on - strand, within A4249_RS11730at 2354.473 kb on - strand, within A4249_RS11730

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,351,639 + -2.3
2,351,639 + -1.0
2,351,640 - +2.6
2,351,669 + +0.9
2,351,670 - +0.1
2,351,670 - -0.5
2,351,670 - +0.3
2,351,670 - -0.1
2,351,670 - -0.4
2,351,673 + -0.8
2,351,673 + -0.3
2,351,673 + -0.5
2,351,673 + +0.8
2,351,673 + +0.9
2,351,673 + +1.5
2,351,673 + +0.3
2,351,673 + +0.6
2,351,673 + -0.5
2,351,674 - +0.5
2,351,674 - -0.1
2,351,674 - +0.0
2,351,674 - -0.6
2,351,674 - +0.4
2,351,674 - -0.4
2,351,674 - -0.4
2,351,674 - -0.1
2,351,683 - +1.4
2,351,683 - +0.3
2,351,683 - -0.6
2,351,683 - +0.2
2,351,683 - +0.0
2,351,746 + -2.2
2,351,746 + -0.7
2,351,746 + +0.1
2,351,746 + -0.8
2,351,746 + +0.2
2,351,746 + -1.0
2,351,746 + +0.8
2,351,746 + +0.7
2,351,747 - -1.0
2,351,747 - +0.5
2,351,747 - -0.4
2,351,747 - +0.0
2,351,807 - +0.6
2,351,858 + -0.8
2,351,880 + +0.1
2,351,881 - +0.1
2,351,883 + +0.5
2,351,883 + -0.7
2,351,883 + +0.3
2,351,883 + +0.2
2,351,884 - -0.8
2,351,884 - -0.7
2,351,884 - +0.5
2,351,884 - +0.7
2,351,884 - -0.3
2,351,884 - -0.4
2,351,887 + -0.6
2,351,923 + +0.9
2,351,923 + -0.1
2,351,924 - -0.3
2,352,001 + +0.0
2,352,001 + +0.1
2,352,001 + -0.3
2,352,001 + +0.4
2,352,001 + -0.9
2,352,001 + +0.4
2,352,001 + +2.1
2,352,001 + +0.2
2,352,002 - +0.1
2,352,002 - +1.8
2,352,002 - -0.9
2,352,002 - +0.1
2,352,002 - -0.5
2,352,002 - +0.4
2,352,002 - +0.0
2,352,002 - -2.4
2,352,005 + -0.4
2,352,005 + +0.1
2,352,005 + +0.5
2,352,005 + -0.1
2,352,006 - +0.6
2,352,006 - +0.1
2,352,006 - -0.0
2,352,006 - +1.4
2,352,036 + -0.4
2,352,036 + -0.7
2,352,036 + -0.1
2,352,036 + -0.5
2,352,036 + +0.8
2,352,036 + -0.8
2,352,036 + -0.9
2,352,036 + -0.2
2,352,036 + -0.4
2,352,037 - -0.9
2,352,041 + -0.8
2,352,041 + -0.6
2,352,042 - +0.7
2,352,042 - -1.1
2,352,059 + -0.6
2,352,059 + -1.5
2,352,059 + -0.3
2,352,059 + -1.1
2,352,059 + +0.2
2,352,060 - +0.2
2,352,060 - -0.2
2,352,120 + A4249_RS16970 0.24 +0.4
2,352,120 + A4249_RS16970 0.24 +0.4
2,352,120 + A4249_RS16970 0.24 +0.9
2,352,131 + A4249_RS16970 0.31 -0.4
2,352,131 + A4249_RS16970 0.31 -1.1
2,352,131 + A4249_RS16970 0.31 -0.6
2,352,131 + A4249_RS16970 0.31 -0.6
2,352,131 + A4249_RS16970 0.31 -1.1
2,352,131 + A4249_RS16970 0.31 -1.1
2,352,131 + A4249_RS16970 0.31 +0.3
2,352,132 - A4249_RS16970 0.32 -0.6
2,352,132 - A4249_RS16970 0.32 -0.1
2,352,170 + A4249_RS16970 0.58 -0.2
2,352,277 - +0.6
2,352,521 + A4249_RS11720 0.11 +0.8
2,352,522 - A4249_RS11720 0.11 -1.5
2,353,523 + +0.0
2,353,523 + -0.4
2,353,524 - +1.6
2,353,524 - +0.6
2,353,638 + +0.8
2,353,638 + -0.7
2,353,638 + -0.7
2,353,638 + +0.4
2,353,638 + -0.5
2,353,638 + +0.3
2,353,638 + -0.6
2,353,638 + -0.1
2,353,639 - -0.2
2,353,723 + -1.1
2,353,897 + A4249_RS11725 0.33 -0.2
2,353,897 + A4249_RS11725 0.33 +0.2
2,353,897 + A4249_RS11725 0.33 +0.9
2,353,897 + A4249_RS11725 0.33 +0.0
2,353,897 + A4249_RS11725 0.33 +0.3
2,353,897 + A4249_RS11725 0.33 -0.9
2,353,897 + A4249_RS11725 0.33 -0.2
2,353,897 + A4249_RS11725 0.33 -0.1
2,353,897 + A4249_RS11725 0.33 +0.5
2,353,897 + A4249_RS11725 0.33 +0.0
2,353,897 + A4249_RS11725 0.33 +0.5
2,353,897 + A4249_RS11725 0.33 +0.0
2,353,897 + A4249_RS11725 0.33 -0.4
2,353,897 + A4249_RS11725 0.33 +0.4
2,353,897 + A4249_RS11725 0.33 -1.4
2,353,897 + A4249_RS11725 0.33 -1.0
2,353,898 - A4249_RS11725 0.34 +0.4
2,353,898 - A4249_RS11725 0.34 -0.5
2,353,898 - A4249_RS11725 0.34 +0.1
2,353,898 - A4249_RS11725 0.34 +0.0
2,353,898 - A4249_RS11725 0.34 +0.6
2,353,898 - A4249_RS11725 0.34 -0.1
2,353,898 - A4249_RS11725 0.34 -1.5
2,353,898 - A4249_RS11725 0.34 -1.5
2,353,898 - A4249_RS11725 0.34 +0.3
2,353,898 - A4249_RS11725 0.34 -1.2
2,353,898 - A4249_RS11725 0.34 +0.3
2,353,898 - A4249_RS11725 0.34 +0.2
2,353,898 - A4249_RS11725 0.34 +0.1
2,353,898 - A4249_RS11725 0.34 -0.5
2,353,898 - A4249_RS11725 0.34 -0.4
2,353,898 - A4249_RS11725 0.34 -0.6
2,353,898 - A4249_RS11725 0.34 -0.5
2,353,898 - A4249_RS11725 0.34 -1.9
2,353,898 - A4249_RS11725 0.34 -1.4
2,353,955 + A4249_RS11725 0.52 +1.1
2,353,955 + A4249_RS11725 0.52 -0.4
2,353,956 - A4249_RS11725 0.53 -0.8
2,353,956 - A4249_RS11725 0.53 +1.0
2,353,956 - A4249_RS11725 0.53 +0.1
2,354,015 + A4249_RS11725 0.72 -0.3
2,354,016 - A4249_RS11725 0.72 -0.2
2,354,016 - A4249_RS11725 0.72 -0.0
2,354,126 + -0.0
2,354,127 - +0.2
2,354,128 + +0.3
2,354,128 + -0.2
2,354,128 + +0.2
2,354,128 + -0.4
2,354,128 + +0.3
2,354,128 + -0.1
2,354,129 - -0.4
2,354,129 - -0.3
2,354,129 - +1.0
2,354,129 - +1.6
2,354,129 - -0.2
2,354,129 - +0.2
2,354,129 - -0.5
2,354,153 + +0.8
2,354,154 - -0.3
2,354,154 - +0.2
2,354,269 + A4249_RS11730 0.12 -1.0
2,354,270 - A4249_RS11730 0.12 -1.2
2,354,270 - A4249_RS11730 0.12 +0.7
2,354,427 + A4249_RS11730 0.48 +0.6
2,354,427 + A4249_RS11730 0.48 -0.6
2,354,428 - A4249_RS11730 0.48 -0.8
2,354,440 + A4249_RS11730 0.51 -0.5
2,354,441 - A4249_RS11730 0.51 -0.6
2,354,472 + A4249_RS11730 0.58 -0.1
2,354,472 + A4249_RS11730 0.58 +0.2
2,354,472 + A4249_RS11730 0.58 +0.0
2,354,473 - A4249_RS11730 0.59 +0.1
2,354,473 - A4249_RS11730 0.59 +0.6
2,354,473 - A4249_RS11730 0.59 -0.3
2,354,473 - A4249_RS11730 0.59 +1.0
2,354,473 - A4249_RS11730 0.59 +0.4
2,354,473 - A4249_RS11730 0.59 +0.6

Or see this region's nucleotide sequence