Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11245

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11235 and A4249_RS11240 are separated by 12 nucleotidesA4249_RS11240 and A4249_RS11245 are separated by 61 nucleotidesA4249_RS11245 and A4249_RS11250 are separated by 242 nucleotidesA4249_RS11250 and A4249_RS11255 are separated by 76 nucleotides A4249_RS11235: A4249_RS11235 - tRNA-Leu, at 2,262,013 to 2,262,097 _RS11235 A4249_RS11240: A4249_RS11240 - alpha/beta hydrolase, at 2,262,110 to 2,262,961 _RS11240 A4249_RS11245: A4249_RS11245 - AsmA family protein, at 2,263,023 to 2,264,993 _RS11245 A4249_RS11250: A4249_RS11250 - hypothetical protein, at 2,265,236 to 2,265,541 _RS11250 A4249_RS11255: A4249_RS11255 - S9 family peptidase, at 2,265,618 to 2,267,729 _RS11255 Position (kb) 2263 2264 2265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2262.220 kb on - strand, within A4249_RS11240at 2262.432 kb on + strand, within A4249_RS11240at 2262.432 kb on + strand, within A4249_RS11240at 2262.433 kb on - strand, within A4249_RS11240at 2262.490 kb on + strand, within A4249_RS11240at 2262.490 kb on + strand, within A4249_RS11240at 2262.490 kb on + strand, within A4249_RS11240at 2262.490 kb on + strand, within A4249_RS11240at 2262.491 kb on - strand, within A4249_RS11240at 2262.491 kb on - strand, within A4249_RS11240at 2262.492 kb on + strand, within A4249_RS11240at 2262.492 kb on + strand, within A4249_RS11240at 2262.492 kb on + strand, within A4249_RS11240at 2262.492 kb on + strand, within A4249_RS11240at 2262.492 kb on + strand, within A4249_RS11240at 2262.493 kb on - strand, within A4249_RS11240at 2262.493 kb on - strand, within A4249_RS11240at 2262.493 kb on - strand, within A4249_RS11240at 2262.493 kb on - strand, within A4249_RS11240at 2262.493 kb on - strand, within A4249_RS11240at 2262.493 kb on - strand, within A4249_RS11240at 2262.493 kb on - strand, within A4249_RS11240at 2262.493 kb on - strand, within A4249_RS11240at 2262.577 kb on - strand, within A4249_RS11240at 2262.577 kb on - strand, within A4249_RS11240at 2262.577 kb on - strand, within A4249_RS11240at 2262.663 kb on + strand, within A4249_RS11240at 2262.721 kb on - strand, within A4249_RS11240at 2262.721 kb on - strand, within A4249_RS11240at 2262.721 kb on - strand, within A4249_RS11240at 2262.756 kb on + strand, within A4249_RS11240at 2262.756 kb on + strand, within A4249_RS11240at 2262.802 kb on - strand, within A4249_RS11240at 2262.834 kb on + strand, within A4249_RS11240at 2262.841 kb on + strand, within A4249_RS11240at 2262.985 kb on + strandat 2262.985 kb on + strandat 2262.985 kb on + strandat 2262.985 kb on + strandat 2262.985 kb on + strandat 2262.985 kb on + strandat 2262.985 kb on + strandat 2262.985 kb on + strandat 2262.985 kb on + strandat 2262.986 kb on - strandat 2262.986 kb on - strandat 2262.986 kb on - strandat 2262.986 kb on - strandat 2262.986 kb on - strandat 2262.986 kb on - strandat 2262.986 kb on - strandat 2262.986 kb on - strandat 2262.986 kb on - strandat 2263.021 kb on + strandat 2263.021 kb on + strandat 2263.021 kb on + strandat 2263.022 kb on - strandat 2263.022 kb on - strandat 2263.022 kb on - strandat 2263.022 kb on - strandat 2263.022 kb on - strandat 2263.022 kb on - strandat 2263.022 kb on - strandat 2263.022 kb on - strandat 2263.022 kb on - strandat 2263.663 kb on + strand, within A4249_RS11245at 2263.664 kb on - strand, within A4249_RS11245at 2263.664 kb on - strand, within A4249_RS11245at 2263.826 kb on - strand, within A4249_RS11245at 2263.835 kb on + strand, within A4249_RS11245at 2264.013 kb on + strand, within A4249_RS11245at 2264.013 kb on + strand, within A4249_RS11245at 2264.141 kb on + strand, within A4249_RS11245at 2264.141 kb on + strand, within A4249_RS11245at 2264.142 kb on - strand, within A4249_RS11245at 2264.142 kb on - strand, within A4249_RS11245at 2264.142 kb on - strand, within A4249_RS11245at 2264.142 kb on - strand, within A4249_RS11245at 2264.170 kb on + strand, within A4249_RS11245at 2264.170 kb on + strand, within A4249_RS11245at 2264.170 kb on + strand, within A4249_RS11245at 2264.170 kb on + strand, within A4249_RS11245at 2264.170 kb on + strand, within A4249_RS11245at 2264.170 kb on + strand, within A4249_RS11245at 2264.171 kb on - strand, within A4249_RS11245at 2264.171 kb on - strand, within A4249_RS11245at 2264.726 kb on + strand, within A4249_RS11245at 2264.726 kb on + strand, within A4249_RS11245at 2264.726 kb on + strand, within A4249_RS11245at 2264.806 kb on + strandat 2264.806 kb on + strandat 2264.806 kb on + strandat 2264.806 kb on + strandat 2264.807 kb on - strandat 2264.807 kb on - strandat 2264.807 kb on - strandat 2264.807 kb on - strandat 2264.807 kb on - strandat 2264.807 kb on - strandat 2264.807 kb on - strandat 2264.950 kb on + strandat 2264.951 kb on - strandat 2264.951 kb on - strandat 2265.160 kb on + strandat 2265.160 kb on + strandat 2265.190 kb on - strandat 2265.211 kb on + strandat 2265.212 kb on - strandat 2265.212 kb on - strandat 2265.212 kb on - strandat 2265.212 kb on - strandat 2265.386 kb on + strand, within A4249_RS11250at 2265.386 kb on + strand, within A4249_RS11250at 2265.386 kb on + strand, within A4249_RS11250at 2265.386 kb on + strand, within A4249_RS11250at 2265.386 kb on + strand, within A4249_RS11250at 2265.386 kb on + strand, within A4249_RS11250at 2265.387 kb on - strand, within A4249_RS11250at 2265.387 kb on - strand, within A4249_RS11250at 2265.387 kb on - strand, within A4249_RS11250at 2265.387 kb on - strand, within A4249_RS11250at 2265.387 kb on - strand, within A4249_RS11250at 2265.387 kb on - strand, within A4249_RS11250at 2265.387 kb on - strand, within A4249_RS11250at 2265.497 kb on + strand, within A4249_RS11250at 2265.497 kb on + strand, within A4249_RS11250at 2265.497 kb on + strand, within A4249_RS11250at 2265.498 kb on - strand, within A4249_RS11250at 2265.498 kb on - strand, within A4249_RS11250at 2265.498 kb on - strand, within A4249_RS11250at 2265.498 kb on - strand, within A4249_RS11250at 2265.498 kb on - strand, within A4249_RS11250at 2265.560 kb on - strandat 2265.560 kb on - strandat 2265.560 kb on - strandat 2265.560 kb on - strandat 2265.560 kb on - strandat 2265.619 kb on + strandat 2265.619 kb on + strandat 2265.620 kb on - strandat 2265.637 kb on + strandat 2265.637 kb on + strandat 2265.637 kb on + strandat 2265.637 kb on + strandat 2265.638 kb on - strandat 2265.871 kb on + strand, within A4249_RS11255at 2265.872 kb on - strand, within A4249_RS11255at 2265.872 kb on - strand, within A4249_RS11255at 2265.905 kb on - strand, within A4249_RS11255at 2265.905 kb on - strand, within A4249_RS11255at 2265.941 kb on - strand, within A4249_RS11255at 2265.941 kb on - strand, within A4249_RS11255at 2265.941 kb on - strand, within A4249_RS11255

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,262,220 - A4249_RS11240 0.13 -1.0
2,262,432 + A4249_RS11240 0.38 +0.6
2,262,432 + A4249_RS11240 0.38 +0.1
2,262,433 - A4249_RS11240 0.38 -1.2
2,262,490 + A4249_RS11240 0.45 +0.2
2,262,490 + A4249_RS11240 0.45 +0.7
2,262,490 + A4249_RS11240 0.45 -0.5
2,262,490 + A4249_RS11240 0.45 -0.0
2,262,491 - A4249_RS11240 0.45 -0.9
2,262,491 - A4249_RS11240 0.45 -1.3
2,262,492 + A4249_RS11240 0.45 -0.2
2,262,492 + A4249_RS11240 0.45 +0.4
2,262,492 + A4249_RS11240 0.45 -0.3
2,262,492 + A4249_RS11240 0.45 -0.6
2,262,492 + A4249_RS11240 0.45 +0.5
2,262,493 - A4249_RS11240 0.45 -1.0
2,262,493 - A4249_RS11240 0.45 -3.3
2,262,493 - A4249_RS11240 0.45 +1.5
2,262,493 - A4249_RS11240 0.45 -0.7
2,262,493 - A4249_RS11240 0.45 +0.1
2,262,493 - A4249_RS11240 0.45 -0.8
2,262,493 - A4249_RS11240 0.45 -1.2
2,262,493 - A4249_RS11240 0.45 +0.0
2,262,577 - A4249_RS11240 0.55 +2.8
2,262,577 - A4249_RS11240 0.55 +1.0
2,262,577 - A4249_RS11240 0.55 -0.8
2,262,663 + A4249_RS11240 0.65 -0.8
2,262,721 - A4249_RS11240 0.72 +0.3
2,262,721 - A4249_RS11240 0.72 -0.2
2,262,721 - A4249_RS11240 0.72 +0.4
2,262,756 + A4249_RS11240 0.76 -0.6
2,262,756 + A4249_RS11240 0.76 +0.1
2,262,802 - A4249_RS11240 0.81 -0.2
2,262,834 + A4249_RS11240 0.85 -0.9
2,262,841 + A4249_RS11240 0.86 -0.5
2,262,985 + +0.2
2,262,985 + +0.4
2,262,985 + -0.9
2,262,985 + -0.5
2,262,985 + +1.4
2,262,985 + +0.1
2,262,985 + +0.2
2,262,985 + -1.1
2,262,985 + -0.8
2,262,986 - -1.4
2,262,986 - +0.0
2,262,986 - +0.4
2,262,986 - -0.2
2,262,986 - -0.3
2,262,986 - +0.9
2,262,986 - +0.8
2,262,986 - +0.5
2,262,986 - -1.7
2,263,021 + +0.2
2,263,021 + -0.4
2,263,021 + -0.6
2,263,022 - +1.6
2,263,022 - +0.5
2,263,022 - -1.3
2,263,022 - -0.3
2,263,022 - -0.4
2,263,022 - +0.4
2,263,022 - -1.0
2,263,022 - +0.3
2,263,022 - +1.0
2,263,663 + A4249_RS11245 0.32 +0.9
2,263,664 - A4249_RS11245 0.33 -0.3
2,263,664 - A4249_RS11245 0.33 +0.3
2,263,826 - A4249_RS11245 0.41 +0.1
2,263,835 + A4249_RS11245 0.41 +0.2
2,264,013 + A4249_RS11245 0.50 +0.6
2,264,013 + A4249_RS11245 0.50 -0.9
2,264,141 + A4249_RS11245 0.57 +0.3
2,264,141 + A4249_RS11245 0.57 -1.0
2,264,142 - A4249_RS11245 0.57 -0.3
2,264,142 - A4249_RS11245 0.57 -0.1
2,264,142 - A4249_RS11245 0.57 +0.6
2,264,142 - A4249_RS11245 0.57 -0.4
2,264,170 + A4249_RS11245 0.58 +0.1
2,264,170 + A4249_RS11245 0.58 +2.5
2,264,170 + A4249_RS11245 0.58 +0.7
2,264,170 + A4249_RS11245 0.58 -1.3
2,264,170 + A4249_RS11245 0.58 -0.9
2,264,170 + A4249_RS11245 0.58 -1.4
2,264,171 - A4249_RS11245 0.58 +0.0
2,264,171 - A4249_RS11245 0.58 -0.5
2,264,726 + A4249_RS11245 0.86 -0.6
2,264,726 + A4249_RS11245 0.86 +0.6
2,264,726 + A4249_RS11245 0.86 -0.2
2,264,806 + -0.8
2,264,806 + -0.2
2,264,806 + +1.8
2,264,806 + -0.2
2,264,807 - +0.1
2,264,807 - -0.1
2,264,807 - -1.2
2,264,807 - +0.4
2,264,807 - +0.4
2,264,807 - -1.1
2,264,807 - -0.3
2,264,950 + +0.5
2,264,951 - +0.3
2,264,951 - -0.2
2,265,160 + +0.7
2,265,160 + +0.4
2,265,190 - +0.0
2,265,211 + -0.9
2,265,212 - -0.5
2,265,212 - -1.7
2,265,212 - +1.1
2,265,212 - +0.5
2,265,386 + A4249_RS11250 0.49 -0.4
2,265,386 + A4249_RS11250 0.49 -0.4
2,265,386 + A4249_RS11250 0.49 -0.5
2,265,386 + A4249_RS11250 0.49 -1.1
2,265,386 + A4249_RS11250 0.49 +0.3
2,265,386 + A4249_RS11250 0.49 -0.5
2,265,387 - A4249_RS11250 0.49 -2.2
2,265,387 - A4249_RS11250 0.49 -1.0
2,265,387 - A4249_RS11250 0.49 +0.8
2,265,387 - A4249_RS11250 0.49 -0.5
2,265,387 - A4249_RS11250 0.49 -0.4
2,265,387 - A4249_RS11250 0.49 -0.0
2,265,387 - A4249_RS11250 0.49 -0.4
2,265,497 + A4249_RS11250 0.85 -0.2
2,265,497 + A4249_RS11250 0.85 -0.2
2,265,497 + A4249_RS11250 0.85 -1.1
2,265,498 - A4249_RS11250 0.86 -0.9
2,265,498 - A4249_RS11250 0.86 +0.4
2,265,498 - A4249_RS11250 0.86 -0.1
2,265,498 - A4249_RS11250 0.86 -0.5
2,265,498 - A4249_RS11250 0.86 +0.6
2,265,560 - -0.9
2,265,560 - -1.8
2,265,560 - +0.1
2,265,560 - +0.1
2,265,560 - -0.1
2,265,619 + +0.1
2,265,619 + +0.9
2,265,620 - -0.9
2,265,637 + +0.6
2,265,637 + +0.2
2,265,637 + +0.0
2,265,637 + -0.2
2,265,638 - +0.3
2,265,871 + A4249_RS11255 0.12 -1.1
2,265,872 - A4249_RS11255 0.12 -0.2
2,265,872 - A4249_RS11255 0.12 -0.8
2,265,905 - A4249_RS11255 0.14 +0.9
2,265,905 - A4249_RS11255 0.14 +0.6
2,265,941 - A4249_RS11255 0.15 -0.6
2,265,941 - A4249_RS11255 0.15 +1.1
2,265,941 - A4249_RS11255 0.15 +0.5

Or see this region's nucleotide sequence