Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10395

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10390 and A4249_RS10395 are separated by 168 nucleotidesA4249_RS10395 and A4249_RS10400 are separated by 10 nucleotides A4249_RS10390: A4249_RS10390 - translation elongation factor 4, at 2,083,514 to 2,085,322 _RS10390 A4249_RS10395: A4249_RS10395 - efflux RND transporter periplasmic adaptor subunit, at 2,085,491 to 2,086,642 _RS10395 A4249_RS10400: A4249_RS10400 - efflux RND transporter permease subunit, at 2,086,653 to 2,089,856 _RS10400 Position (kb) 2085 2086 2087Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2084.959 kb on - strand, within A4249_RS10390at 2085.096 kb on + strand, within A4249_RS10390at 2085.097 kb on - strand, within A4249_RS10390at 2085.097 kb on - strand, within A4249_RS10390at 2085.179 kb on - strandat 2085.335 kb on - strandat 2085.392 kb on + strandat 2085.392 kb on + strandat 2085.393 kb on - strandat 2085.393 kb on - strandat 2085.395 kb on + strandat 2085.395 kb on + strandat 2085.395 kb on + strandat 2085.396 kb on - strandat 2085.396 kb on - strandat 2085.396 kb on - strandat 2085.396 kb on - strandat 2085.396 kb on - strandat 2085.744 kb on - strand, within A4249_RS10395at 2085.744 kb on - strand, within A4249_RS10395at 2085.744 kb on - strand, within A4249_RS10395at 2085.761 kb on + strand, within A4249_RS10395at 2085.761 kb on + strand, within A4249_RS10395at 2085.762 kb on - strand, within A4249_RS10395at 2085.762 kb on - strand, within A4249_RS10395at 2085.762 kb on - strand, within A4249_RS10395at 2085.762 kb on - strand, within A4249_RS10395at 2085.762 kb on - strand, within A4249_RS10395at 2085.938 kb on - strand, within A4249_RS10395at 2086.394 kb on + strand, within A4249_RS10395at 2086.418 kb on + strand, within A4249_RS10395at 2086.418 kb on + strand, within A4249_RS10395at 2086.418 kb on + strand, within A4249_RS10395at 2086.418 kb on + strand, within A4249_RS10395at 2086.418 kb on + strand, within A4249_RS10395at 2086.418 kb on + strand, within A4249_RS10395at 2086.418 kb on + strand, within A4249_RS10395at 2086.419 kb on - strand, within A4249_RS10395at 2086.419 kb on - strand, within A4249_RS10395at 2086.419 kb on - strand, within A4249_RS10395at 2086.419 kb on - strand, within A4249_RS10395at 2086.419 kb on - strand, within A4249_RS10395at 2086.633 kb on - strandat 2086.746 kb on + strandat 2086.746 kb on + strandat 2086.746 kb on + strandat 2086.746 kb on + strandat 2086.746 kb on + strandat 2086.747 kb on - strandat 2086.747 kb on - strandat 2086.747 kb on - strandat 2086.747 kb on - strandat 2086.747 kb on - strandat 2086.747 kb on - strandat 2086.747 kb on - strandat 2087.082 kb on + strand, within A4249_RS10400at 2087.082 kb on + strand, within A4249_RS10400at 2087.082 kb on + strand, within A4249_RS10400at 2087.082 kb on + strand, within A4249_RS10400at 2087.082 kb on + strand, within A4249_RS10400at 2087.082 kb on + strand, within A4249_RS10400at 2087.082 kb on + strand, within A4249_RS10400at 2087.082 kb on + strand, within A4249_RS10400at 2087.082 kb on + strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.083 kb on - strand, within A4249_RS10400at 2087.544 kb on + strand, within A4249_RS10400at 2087.544 kb on + strand, within A4249_RS10400at 2087.544 kb on + strand, within A4249_RS10400at 2087.544 kb on + strand, within A4249_RS10400at 2087.545 kb on - strand, within A4249_RS10400at 2087.545 kb on - strand, within A4249_RS10400at 2087.545 kb on - strand, within A4249_RS10400at 2087.545 kb on - strand, within A4249_RS10400at 2087.545 kb on - strand, within A4249_RS10400at 2087.545 kb on - strand, within A4249_RS10400at 2087.545 kb on - strand, within A4249_RS10400at 2087.545 kb on - strand, within A4249_RS10400

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,084,959 - A4249_RS10390 0.80 -0.2
2,085,096 + A4249_RS10390 0.87 +0.7
2,085,097 - A4249_RS10390 0.88 +1.0
2,085,097 - A4249_RS10390 0.88 +1.2
2,085,179 - +2.8
2,085,335 - +0.8
2,085,392 + +0.2
2,085,392 + -1.1
2,085,393 - +1.3
2,085,393 - -0.9
2,085,395 + -0.6
2,085,395 + -0.9
2,085,395 + -0.7
2,085,396 - +0.1
2,085,396 - -1.4
2,085,396 - -0.6
2,085,396 - -0.1
2,085,396 - -0.5
2,085,744 - A4249_RS10395 0.22 -0.6
2,085,744 - A4249_RS10395 0.22 -1.1
2,085,744 - A4249_RS10395 0.22 -0.3
2,085,761 + A4249_RS10395 0.23 +0.5
2,085,761 + A4249_RS10395 0.23 -0.2
2,085,762 - A4249_RS10395 0.24 +0.4
2,085,762 - A4249_RS10395 0.24 +1.3
2,085,762 - A4249_RS10395 0.24 -0.6
2,085,762 - A4249_RS10395 0.24 -0.7
2,085,762 - A4249_RS10395 0.24 -0.5
2,085,938 - A4249_RS10395 0.39 +2.6
2,086,394 + A4249_RS10395 0.78 +1.1
2,086,418 + A4249_RS10395 0.80 -0.3
2,086,418 + A4249_RS10395 0.80 -0.7
2,086,418 + A4249_RS10395 0.80 -0.3
2,086,418 + A4249_RS10395 0.80 +0.4
2,086,418 + A4249_RS10395 0.80 +0.3
2,086,418 + A4249_RS10395 0.80 +1.1
2,086,418 + A4249_RS10395 0.80 +0.0
2,086,419 - A4249_RS10395 0.81 +0.0
2,086,419 - A4249_RS10395 0.81 +0.2
2,086,419 - A4249_RS10395 0.81 -0.6
2,086,419 - A4249_RS10395 0.81 +0.2
2,086,419 - A4249_RS10395 0.81 +0.2
2,086,633 - +0.3
2,086,746 + -0.3
2,086,746 + -0.4
2,086,746 + -0.2
2,086,746 + -0.0
2,086,746 + +0.3
2,086,747 - +0.1
2,086,747 - -0.2
2,086,747 - +0.7
2,086,747 - -0.3
2,086,747 - +0.1
2,086,747 - +0.2
2,086,747 - +0.2
2,087,082 + A4249_RS10400 0.13 -0.1
2,087,082 + A4249_RS10400 0.13 -0.7
2,087,082 + A4249_RS10400 0.13 -0.2
2,087,082 + A4249_RS10400 0.13 +0.2
2,087,082 + A4249_RS10400 0.13 -0.6
2,087,082 + A4249_RS10400 0.13 -1.0
2,087,082 + A4249_RS10400 0.13 -0.8
2,087,082 + A4249_RS10400 0.13 -0.2
2,087,082 + A4249_RS10400 0.13 +0.4
2,087,083 - A4249_RS10400 0.13 +0.6
2,087,083 - A4249_RS10400 0.13 +0.1
2,087,083 - A4249_RS10400 0.13 -0.0
2,087,083 - A4249_RS10400 0.13 -1.8
2,087,083 - A4249_RS10400 0.13 -0.3
2,087,083 - A4249_RS10400 0.13 +0.1
2,087,083 - A4249_RS10400 0.13 -0.2
2,087,083 - A4249_RS10400 0.13 -0.4
2,087,083 - A4249_RS10400 0.13 -0.3
2,087,083 - A4249_RS10400 0.13 -0.4
2,087,083 - A4249_RS10400 0.13 -0.0
2,087,083 - A4249_RS10400 0.13 +0.1
2,087,083 - A4249_RS10400 0.13 -0.2
2,087,083 - A4249_RS10400 0.13 -0.4
2,087,083 - A4249_RS10400 0.13 -0.6
2,087,083 - A4249_RS10400 0.13 -0.2
2,087,083 - A4249_RS10400 0.13 -0.2
2,087,083 - A4249_RS10400 0.13 -0.1
2,087,083 - A4249_RS10400 0.13 -0.4
2,087,544 + A4249_RS10400 0.28 -0.7
2,087,544 + A4249_RS10400 0.28 -0.3
2,087,544 + A4249_RS10400 0.28 +0.4
2,087,544 + A4249_RS10400 0.28 -0.2
2,087,545 - A4249_RS10400 0.28 +0.3
2,087,545 - A4249_RS10400 0.28 -0.7
2,087,545 - A4249_RS10400 0.28 -0.8
2,087,545 - A4249_RS10400 0.28 +0.2
2,087,545 - A4249_RS10400 0.28 +0.9
2,087,545 - A4249_RS10400 0.28 -0.9
2,087,545 - A4249_RS10400 0.28 -0.9
2,087,545 - A4249_RS10400 0.28 +0.4

Or see this region's nucleotide sequence