Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09710

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09700 and A4249_RS09705 are separated by 48 nucleotidesA4249_RS09705 and A4249_RS09710 are separated by 41 nucleotidesA4249_RS09710 and A4249_RS09715 are separated by 73 nucleotidesA4249_RS09715 and A4249_RS09720 are separated by 20 nucleotides A4249_RS09700: A4249_RS09700 - exodeoxyribonuclease VII small subunit, at 1,935,217 to 1,935,468 _RS09700 A4249_RS09705: A4249_RS09705 - histidine phosphatase family protein, at 1,935,517 to 1,936,179 _RS09705 A4249_RS09710: A4249_RS09710 - histone deacetylase family protein, at 1,936,221 to 1,937,141 _RS09710 A4249_RS09715: A4249_RS09715 - GNAT family N-acetyltransferase, at 1,937,215 to 1,937,742 _RS09715 A4249_RS09720: A4249_RS09720 - VWA domain-containing protein, at 1,937,763 to 1,938,941 _RS09720 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1935.344 kb on + strand, within A4249_RS09700at 1935.345 kb on - strand, within A4249_RS09700at 1935.481 kb on - strandat 1936.266 kb on + strandat 1936.266 kb on + strandat 1936.267 kb on - strandat 1936.267 kb on - strandat 1936.267 kb on - strandat 1936.538 kb on + strand, within A4249_RS09710at 1936.539 kb on - strand, within A4249_RS09710at 1936.579 kb on + strand, within A4249_RS09710at 1936.579 kb on + strand, within A4249_RS09710at 1936.580 kb on - strand, within A4249_RS09710at 1936.957 kb on + strand, within A4249_RS09710at 1936.957 kb on + strand, within A4249_RS09710at 1936.957 kb on + strand, within A4249_RS09710at 1936.958 kb on - strand, within A4249_RS09710at 1936.958 kb on - strand, within A4249_RS09710at 1936.958 kb on - strand, within A4249_RS09710at 1936.958 kb on - strand, within A4249_RS09710at 1936.958 kb on - strand, within A4249_RS09710at 1936.958 kb on - strand, within A4249_RS09710at 1937.111 kb on + strandat 1937.111 kb on + strandat 1937.111 kb on + strandat 1937.111 kb on + strandat 1937.111 kb on + strandat 1937.111 kb on + strandat 1937.111 kb on + strandat 1937.111 kb on + strandat 1937.111 kb on + strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.112 kb on - strandat 1937.153 kb on + strandat 1937.153 kb on + strandat 1937.154 kb on - strandat 1937.203 kb on + strandat 1937.299 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.518 kb on + strand, within A4249_RS09715at 1937.519 kb on - strand, within A4249_RS09715at 1937.519 kb on - strand, within A4249_RS09715at 1937.519 kb on - strand, within A4249_RS09715at 1937.519 kb on - strand, within A4249_RS09715at 1937.519 kb on - strand, within A4249_RS09715at 1937.519 kb on - strand, within A4249_RS09715at 1937.519 kb on - strand, within A4249_RS09715at 1937.519 kb on - strand, within A4249_RS09715at 1937.519 kb on - strand, within A4249_RS09715at 1937.522 kb on + strand, within A4249_RS09715at 1937.522 kb on + strand, within A4249_RS09715at 1937.522 kb on + strand, within A4249_RS09715at 1937.522 kb on + strand, within A4249_RS09715at 1937.522 kb on + strand, within A4249_RS09715at 1937.522 kb on + strand, within A4249_RS09715at 1937.522 kb on + strand, within A4249_RS09715at 1937.523 kb on - strand, within A4249_RS09715at 1937.523 kb on - strand, within A4249_RS09715at 1937.654 kb on - strand, within A4249_RS09715at 1937.662 kb on + strand, within A4249_RS09715at 1937.662 kb on + strand, within A4249_RS09715at 1937.662 kb on + strand, within A4249_RS09715at 1937.662 kb on + strand, within A4249_RS09715at 1937.662 kb on + strand, within A4249_RS09715at 1937.663 kb on - strand, within A4249_RS09715at 1937.663 kb on - strand, within A4249_RS09715at 1937.686 kb on + strand, within A4249_RS09715at 1937.686 kb on + strand, within A4249_RS09715at 1937.686 kb on + strand, within A4249_RS09715at 1937.686 kb on + strand, within A4249_RS09715at 1937.687 kb on - strand, within A4249_RS09715at 1937.687 kb on - strand, within A4249_RS09715at 1937.692 kb on + strandat 1937.693 kb on - strandat 1937.883 kb on + strand, within A4249_RS09720at 1937.883 kb on + strand, within A4249_RS09720at 1937.883 kb on + strand, within A4249_RS09720at 1937.883 kb on + strand, within A4249_RS09720at 1937.883 kb on + strand, within A4249_RS09720at 1937.883 kb on + strand, within A4249_RS09720at 1937.883 kb on + strand, within A4249_RS09720at 1937.883 kb on + strand, within A4249_RS09720at 1937.884 kb on - strand, within A4249_RS09720at 1937.884 kb on - strand, within A4249_RS09720at 1937.884 kb on - strand, within A4249_RS09720at 1937.884 kb on - strand, within A4249_RS09720at 1937.884 kb on - strand, within A4249_RS09720at 1937.884 kb on - strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.925 kb on + strand, within A4249_RS09720at 1937.926 kb on - strand, within A4249_RS09720at 1937.926 kb on - strand, within A4249_RS09720at 1937.926 kb on - strand, within A4249_RS09720at 1938.042 kb on + strand, within A4249_RS09720at 1938.042 kb on + strand, within A4249_RS09720

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,935,344 + A4249_RS09700 0.50 +0.5
1,935,345 - A4249_RS09700 0.51 +1.5
1,935,481 - +0.2
1,936,266 + -0.8
1,936,266 + -1.7
1,936,267 - -0.5
1,936,267 - +0.6
1,936,267 - -0.3
1,936,538 + A4249_RS09710 0.34 -0.5
1,936,539 - A4249_RS09710 0.35 -0.1
1,936,579 + A4249_RS09710 0.39 +0.6
1,936,579 + A4249_RS09710 0.39 -0.9
1,936,580 - A4249_RS09710 0.39 -0.0
1,936,957 + A4249_RS09710 0.80 +0.5
1,936,957 + A4249_RS09710 0.80 +0.5
1,936,957 + A4249_RS09710 0.80 -0.3
1,936,958 - A4249_RS09710 0.80 -1.1
1,936,958 - A4249_RS09710 0.80 -0.2
1,936,958 - A4249_RS09710 0.80 +1.5
1,936,958 - A4249_RS09710 0.80 +0.4
1,936,958 - A4249_RS09710 0.80 +2.2
1,936,958 - A4249_RS09710 0.80 -0.4
1,937,111 + +0.8
1,937,111 + -0.1
1,937,111 + +0.1
1,937,111 + +0.2
1,937,111 + -1.4
1,937,111 + +0.2
1,937,111 + -0.8
1,937,111 + -0.9
1,937,111 + +0.3
1,937,112 - +2.0
1,937,112 - -1.1
1,937,112 - +0.4
1,937,112 - +0.9
1,937,112 - -0.6
1,937,112 - -0.6
1,937,112 - +0.5
1,937,112 - -1.0
1,937,112 - -0.2
1,937,112 - -0.4
1,937,112 - -1.0
1,937,112 - -0.2
1,937,112 - -0.2
1,937,153 + +0.4
1,937,153 + -0.4
1,937,154 - +0.3
1,937,203 + +0.1
1,937,299 + A4249_RS09715 0.16 +0.6
1,937,518 + A4249_RS09715 0.57 -0.0
1,937,518 + A4249_RS09715 0.57 -1.1
1,937,518 + A4249_RS09715 0.57 -0.4
1,937,518 + A4249_RS09715 0.57 -0.2
1,937,518 + A4249_RS09715 0.57 +0.2
1,937,518 + A4249_RS09715 0.57 +4.4
1,937,518 + A4249_RS09715 0.57 -0.8
1,937,518 + A4249_RS09715 0.57 -0.0
1,937,518 + A4249_RS09715 0.57 -1.4
1,937,518 + A4249_RS09715 0.57 +0.6
1,937,518 + A4249_RS09715 0.57 +0.6
1,937,518 + A4249_RS09715 0.57 -0.6
1,937,519 - A4249_RS09715 0.58 +0.3
1,937,519 - A4249_RS09715 0.58 -0.1
1,937,519 - A4249_RS09715 0.58 -0.3
1,937,519 - A4249_RS09715 0.58 -0.3
1,937,519 - A4249_RS09715 0.58 +0.1
1,937,519 - A4249_RS09715 0.58 -0.0
1,937,519 - A4249_RS09715 0.58 -0.2
1,937,519 - A4249_RS09715 0.58 +0.5
1,937,519 - A4249_RS09715 0.58 +0.5
1,937,522 + A4249_RS09715 0.58 +0.8
1,937,522 + A4249_RS09715 0.58 -1.4
1,937,522 + A4249_RS09715 0.58 +1.2
1,937,522 + A4249_RS09715 0.58 +0.5
1,937,522 + A4249_RS09715 0.58 -0.8
1,937,522 + A4249_RS09715 0.58 +0.7
1,937,522 + A4249_RS09715 0.58 -0.7
1,937,523 - A4249_RS09715 0.58 -0.1
1,937,523 - A4249_RS09715 0.58 +0.1
1,937,654 - A4249_RS09715 0.83 +0.1
1,937,662 + A4249_RS09715 0.85 -0.2
1,937,662 + A4249_RS09715 0.85 -0.0
1,937,662 + A4249_RS09715 0.85 +1.4
1,937,662 + A4249_RS09715 0.85 -0.1
1,937,662 + A4249_RS09715 0.85 -0.7
1,937,663 - A4249_RS09715 0.85 -2.1
1,937,663 - A4249_RS09715 0.85 -0.3
1,937,686 + A4249_RS09715 0.89 -0.4
1,937,686 + A4249_RS09715 0.89 -1.3
1,937,686 + A4249_RS09715 0.89 -2.1
1,937,686 + A4249_RS09715 0.89 +1.1
1,937,687 - A4249_RS09715 0.89 +1.6
1,937,687 - A4249_RS09715 0.89 -0.8
1,937,692 + -0.1
1,937,693 - -0.1
1,937,883 + A4249_RS09720 0.10 -0.1
1,937,883 + A4249_RS09720 0.10 +1.0
1,937,883 + A4249_RS09720 0.10 +0.5
1,937,883 + A4249_RS09720 0.10 -0.4
1,937,883 + A4249_RS09720 0.10 +1.0
1,937,883 + A4249_RS09720 0.10 +1.6
1,937,883 + A4249_RS09720 0.10 -0.5
1,937,883 + A4249_RS09720 0.10 -0.2
1,937,884 - A4249_RS09720 0.10 +0.7
1,937,884 - A4249_RS09720 0.10 +0.3
1,937,884 - A4249_RS09720 0.10 +0.2
1,937,884 - A4249_RS09720 0.10 +0.3
1,937,884 - A4249_RS09720 0.10 -0.9
1,937,884 - A4249_RS09720 0.10 -0.0
1,937,925 + A4249_RS09720 0.14 -0.0
1,937,925 + A4249_RS09720 0.14 -1.0
1,937,925 + A4249_RS09720 0.14 +0.1
1,937,925 + A4249_RS09720 0.14 -1.0
1,937,925 + A4249_RS09720 0.14 -1.1
1,937,925 + A4249_RS09720 0.14 -0.3
1,937,925 + A4249_RS09720 0.14 -0.2
1,937,925 + A4249_RS09720 0.14 -0.4
1,937,925 + A4249_RS09720 0.14 -0.1
1,937,925 + A4249_RS09720 0.14 -0.3
1,937,926 - A4249_RS09720 0.14 +0.4
1,937,926 - A4249_RS09720 0.14 +0.0
1,937,926 - A4249_RS09720 0.14 -1.2
1,938,042 + A4249_RS09720 0.24 -0.1
1,938,042 + A4249_RS09720 0.24 +0.1

Or see this region's nucleotide sequence