Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09625

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09615 and A4249_RS09620 are separated by 180 nucleotidesA4249_RS09620 and A4249_RS09625 are separated by 14 nucleotidesA4249_RS09625 and A4249_RS09630 are separated by 13 nucleotidesA4249_RS09630 and A4249_RS09635 are separated by 12 nucleotides A4249_RS09615: A4249_RS09615 - flagellar basal body-associated FliL family protein, at 1,918,357 to 1,919,028 _RS09615 A4249_RS09620: A4249_RS09620 - flagellar basal-body rod protein FlgF, at 1,919,209 to 1,919,949 _RS09620 A4249_RS09625: A4249_RS09625 - flagellar basal-body rod protein FlgG, at 1,919,964 to 1,920,752 _RS09625 A4249_RS09630: A4249_RS09630 - flagella basal body P-ring formation protein FlgA, at 1,920,766 to 1,921,371 _RS09630 A4249_RS09635: A4249_RS09635 - flagellar basal body L-ring protein FlgH, at 1,921,384 to 1,922,106 _RS09635 Position (kb) 1919 1920 1921Strain fitness (log2 ratio) -2 -1 0 1at 1919.155 kb on + strandat 1919.155 kb on + strandat 1919.156 kb on - strandat 1919.156 kb on - strandat 1919.224 kb on + strandat 1919.224 kb on + strandat 1919.224 kb on + strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.225 kb on - strandat 1919.227 kb on - strandat 1919.518 kb on + strand, within A4249_RS09620at 1919.518 kb on + strand, within A4249_RS09620at 1919.519 kb on - strand, within A4249_RS09620at 1919.519 kb on - strand, within A4249_RS09620at 1919.519 kb on - strand, within A4249_RS09620at 1919.519 kb on - strand, within A4249_RS09620at 1919.869 kb on + strand, within A4249_RS09620at 1919.947 kb on + strandat 1919.948 kb on - strandat 1920.097 kb on - strand, within A4249_RS09625at 1920.097 kb on - strand, within A4249_RS09625at 1920.097 kb on - strand, within A4249_RS09625at 1920.195 kb on + strand, within A4249_RS09625at 1920.240 kb on + strand, within A4249_RS09625at 1920.267 kb on + strand, within A4249_RS09625at 1920.267 kb on + strand, within A4249_RS09625at 1920.267 kb on + strand, within A4249_RS09625at 1920.267 kb on + strand, within A4249_RS09625at 1920.267 kb on + strand, within A4249_RS09625at 1920.268 kb on - strand, within A4249_RS09625at 1920.268 kb on - strand, within A4249_RS09625at 1920.268 kb on - strand, within A4249_RS09625at 1920.268 kb on - strand, within A4249_RS09625at 1920.268 kb on - strand, within A4249_RS09625at 1920.303 kb on + strand, within A4249_RS09625at 1920.303 kb on + strand, within A4249_RS09625at 1920.303 kb on + strand, within A4249_RS09625at 1920.304 kb on - strand, within A4249_RS09625at 1920.304 kb on - strand, within A4249_RS09625at 1920.304 kb on - strand, within A4249_RS09625at 1920.304 kb on - strand, within A4249_RS09625at 1920.364 kb on - strand, within A4249_RS09625at 1920.615 kb on + strand, within A4249_RS09625at 1920.615 kb on + strand, within A4249_RS09625at 1920.616 kb on - strand, within A4249_RS09625at 1920.616 kb on - strand, within A4249_RS09625at 1920.682 kb on - strandat 1921.121 kb on - strand, within A4249_RS09630at 1921.121 kb on - strand, within A4249_RS09630at 1921.161 kb on + strand, within A4249_RS09630at 1921.161 kb on + strand, within A4249_RS09630at 1921.162 kb on - strand, within A4249_RS09630at 1921.162 kb on - strand, within A4249_RS09630at 1921.173 kb on + strand, within A4249_RS09630at 1921.174 kb on - strand, within A4249_RS09630at 1921.174 kb on - strand, within A4249_RS09630at 1921.177 kb on + strand, within A4249_RS09630at 1921.177 kb on + strand, within A4249_RS09630at 1921.178 kb on - strand, within A4249_RS09630at 1921.178 kb on - strand, within A4249_RS09630at 1921.178 kb on - strand, within A4249_RS09630at 1921.178 kb on - strand, within A4249_RS09630at 1921.178 kb on - strand, within A4249_RS09630at 1921.178 kb on - strand, within A4249_RS09630at 1921.389 kb on + strandat 1921.389 kb on + strandat 1921.389 kb on + strandat 1921.389 kb on + strandat 1921.390 kb on - strandat 1921.516 kb on + strand, within A4249_RS09635at 1921.516 kb on + strand, within A4249_RS09635at 1921.516 kb on + strand, within A4249_RS09635at 1921.516 kb on + strand, within A4249_RS09635at 1921.516 kb on + strand, within A4249_RS09635at 1921.516 kb on + strand, within A4249_RS09635at 1921.517 kb on - strand, within A4249_RS09635at 1921.517 kb on - strand, within A4249_RS09635at 1921.517 kb on - strand, within A4249_RS09635at 1921.517 kb on - strand, within A4249_RS09635at 1921.517 kb on - strand, within A4249_RS09635at 1921.517 kb on - strand, within A4249_RS09635at 1921.608 kb on + strand, within A4249_RS09635at 1921.609 kb on - strand, within A4249_RS09635at 1921.609 kb on - strand, within A4249_RS09635

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,919,155 + +0.2
1,919,155 + -0.4
1,919,156 - +0.1
1,919,156 - +0.3
1,919,224 + +0.2
1,919,224 + -0.6
1,919,224 + +0.9
1,919,225 - -0.6
1,919,225 - +0.3
1,919,225 - -0.8
1,919,225 - +0.1
1,919,225 - -0.5
1,919,225 - +0.7
1,919,225 - +0.6
1,919,225 - -0.2
1,919,225 - -0.7
1,919,225 - +0.1
1,919,227 - -0.4
1,919,518 + A4249_RS09620 0.42 -1.1
1,919,518 + A4249_RS09620 0.42 +0.2
1,919,519 - A4249_RS09620 0.42 +0.2
1,919,519 - A4249_RS09620 0.42 -0.4
1,919,519 - A4249_RS09620 0.42 -0.1
1,919,519 - A4249_RS09620 0.42 +0.2
1,919,869 + A4249_RS09620 0.89 -0.7
1,919,947 + -0.4
1,919,948 - -0.4
1,920,097 - A4249_RS09625 0.17 -0.5
1,920,097 - A4249_RS09625 0.17 +1.0
1,920,097 - A4249_RS09625 0.17 -0.4
1,920,195 + A4249_RS09625 0.29 -0.5
1,920,240 + A4249_RS09625 0.35 -1.6
1,920,267 + A4249_RS09625 0.38 -0.6
1,920,267 + A4249_RS09625 0.38 +0.2
1,920,267 + A4249_RS09625 0.38 -0.0
1,920,267 + A4249_RS09625 0.38 -0.2
1,920,267 + A4249_RS09625 0.38 -0.6
1,920,268 - A4249_RS09625 0.39 -1.8
1,920,268 - A4249_RS09625 0.39 +0.2
1,920,268 - A4249_RS09625 0.39 -0.6
1,920,268 - A4249_RS09625 0.39 +0.7
1,920,268 - A4249_RS09625 0.39 -0.3
1,920,303 + A4249_RS09625 0.43 +0.0
1,920,303 + A4249_RS09625 0.43 -0.4
1,920,303 + A4249_RS09625 0.43 -0.6
1,920,304 - A4249_RS09625 0.43 -1.4
1,920,304 - A4249_RS09625 0.43 -0.4
1,920,304 - A4249_RS09625 0.43 +0.7
1,920,304 - A4249_RS09625 0.43 -1.1
1,920,364 - A4249_RS09625 0.51 +0.4
1,920,615 + A4249_RS09625 0.83 -0.1
1,920,615 + A4249_RS09625 0.83 -0.2
1,920,616 - A4249_RS09625 0.83 -0.8
1,920,616 - A4249_RS09625 0.83 +0.7
1,920,682 - -0.7
1,921,121 - A4249_RS09630 0.59 -0.2
1,921,121 - A4249_RS09630 0.59 -0.3
1,921,161 + A4249_RS09630 0.65 -0.8
1,921,161 + A4249_RS09630 0.65 -1.0
1,921,162 - A4249_RS09630 0.65 -0.1
1,921,162 - A4249_RS09630 0.65 +0.9
1,921,173 + A4249_RS09630 0.67 +0.2
1,921,174 - A4249_RS09630 0.67 +0.4
1,921,174 - A4249_RS09630 0.67 +1.6
1,921,177 + A4249_RS09630 0.68 -0.6
1,921,177 + A4249_RS09630 0.68 -0.3
1,921,178 - A4249_RS09630 0.68 -0.0
1,921,178 - A4249_RS09630 0.68 +0.5
1,921,178 - A4249_RS09630 0.68 -0.5
1,921,178 - A4249_RS09630 0.68 -1.0
1,921,178 - A4249_RS09630 0.68 +0.2
1,921,178 - A4249_RS09630 0.68 -0.3
1,921,389 + -0.7
1,921,389 + +0.4
1,921,389 + -0.2
1,921,389 + -0.8
1,921,390 - -1.1
1,921,516 + A4249_RS09635 0.18 -0.4
1,921,516 + A4249_RS09635 0.18 +0.8
1,921,516 + A4249_RS09635 0.18 -0.0
1,921,516 + A4249_RS09635 0.18 +0.9
1,921,516 + A4249_RS09635 0.18 -0.5
1,921,516 + A4249_RS09635 0.18 -0.4
1,921,517 - A4249_RS09635 0.18 -0.3
1,921,517 - A4249_RS09635 0.18 -0.8
1,921,517 - A4249_RS09635 0.18 -0.9
1,921,517 - A4249_RS09635 0.18 -0.9
1,921,517 - A4249_RS09635 0.18 -0.8
1,921,517 - A4249_RS09635 0.18 +0.4
1,921,608 + A4249_RS09635 0.31 +0.3
1,921,609 - A4249_RS09635 0.31 -0.9
1,921,609 - A4249_RS09635 0.31 +0.1

Or see this region's nucleotide sequence