Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09540

Experiment: Guanosine 0.35306 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS09535 and A4249_RS09540 are separated by 85 nucleotidesA4249_RS09540 and A4249_RS09545 are separated by 121 nucleotidesA4249_RS09545 and A4249_RS09550 overlap by 4 nucleotides A4249_RS09535: A4249_RS09535 - FecR domain-containing protein, at 1,904,682 to 1,905,653 _RS09535 A4249_RS09540: A4249_RS09540 - sigma-70 family RNA polymerase sigma factor, at 1,905,739 to 1,906,302 _RS09540 A4249_RS09545: A4249_RS09545 - thermostable hemolysin, at 1,906,424 to 1,907,110 _RS09545 A4249_RS09550: A4249_RS09550 - AMP-binding protein, at 1,907,107 to 1,908,552 _RS09550 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -1 0 1at 1904.887 kb on + strand, within A4249_RS09535at 1904.887 kb on + strand, within A4249_RS09535at 1904.888 kb on - strand, within A4249_RS09535at 1904.888 kb on - strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.728 kb on - strandat 1905.788 kb on + strandat 1905.788 kb on + strandat 1905.788 kb on + strandat 1905.788 kb on + strandat 1905.789 kb on - strandat 1905.789 kb on - strandat 1906.563 kb on - strand, within A4249_RS09545at 1906.563 kb on - strand, within A4249_RS09545at 1906.574 kb on + strand, within A4249_RS09545at 1906.574 kb on + strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.641 kb on - strand, within A4249_RS09545at 1906.641 kb on - strand, within A4249_RS09545at 1906.682 kb on + strand, within A4249_RS09545at 1906.682 kb on + strand, within A4249_RS09545at 1906.682 kb on + strand, within A4249_RS09545at 1906.683 kb on - strand, within A4249_RS09545at 1906.683 kb on - strand, within A4249_RS09545at 1906.695 kb on - strand, within A4249_RS09545at 1906.695 kb on - strand, within A4249_RS09545at 1906.695 kb on - strand, within A4249_RS09545at 1906.695 kb on - strand, within A4249_RS09545at 1906.695 kb on - strand, within A4249_RS09545at 1906.979 kb on + strand, within A4249_RS09545at 1906.979 kb on + strand, within A4249_RS09545at 1906.982 kb on + strand, within A4249_RS09545at 1906.982 kb on + strand, within A4249_RS09545at 1906.982 kb on + strand, within A4249_RS09545at 1906.983 kb on - strand, within A4249_RS09545at 1906.983 kb on - strand, within A4249_RS09545at 1906.983 kb on - strand, within A4249_RS09545at 1907.093 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
remove
1,904,887 + A4249_RS09535 0.21 -1.1
1,904,887 + A4249_RS09535 0.21 +0.2
1,904,888 - A4249_RS09535 0.21 +0.1
1,904,888 - A4249_RS09535 0.21 +0.2
1,905,304 + A4249_RS09535 0.64 -0.5
1,905,304 + A4249_RS09535 0.64 +0.6
1,905,304 + A4249_RS09535 0.64 -0.8
1,905,304 + A4249_RS09535 0.64 -0.7
1,905,305 - A4249_RS09535 0.64 +0.4
1,905,305 - A4249_RS09535 0.64 -1.0
1,905,305 - A4249_RS09535 0.64 -0.2
1,905,305 - A4249_RS09535 0.64 +0.2
1,905,728 - -0.3
1,905,788 + +1.6
1,905,788 + -0.0
1,905,788 + -0.7
1,905,788 + +0.2
1,905,789 - -0.3
1,905,789 - +1.0
1,906,563 - A4249_RS09545 0.20 +0.7
1,906,563 - A4249_RS09545 0.20 -0.8
1,906,574 + A4249_RS09545 0.22 +0.0
1,906,574 + A4249_RS09545 0.22 -0.7
1,906,575 - A4249_RS09545 0.22 -0.8
1,906,575 - A4249_RS09545 0.22 -0.3
1,906,575 - A4249_RS09545 0.22 -0.2
1,906,575 - A4249_RS09545 0.22 -0.3
1,906,575 - A4249_RS09545 0.22 -0.3
1,906,575 - A4249_RS09545 0.22 -0.6
1,906,640 + A4249_RS09545 0.31 +0.3
1,906,640 + A4249_RS09545 0.31 +0.5
1,906,640 + A4249_RS09545 0.31 -1.0
1,906,640 + A4249_RS09545 0.31 -0.4
1,906,640 + A4249_RS09545 0.31 -0.4
1,906,641 - A4249_RS09545 0.32 -0.9
1,906,641 - A4249_RS09545 0.32 +0.5
1,906,682 + A4249_RS09545 0.38 +0.4
1,906,682 + A4249_RS09545 0.38 +0.3
1,906,682 + A4249_RS09545 0.38 -0.2
1,906,683 - A4249_RS09545 0.38 -0.2
1,906,683 - A4249_RS09545 0.38 +0.0
1,906,695 - A4249_RS09545 0.39 +0.6
1,906,695 - A4249_RS09545 0.39 +0.0
1,906,695 - A4249_RS09545 0.39 -0.2
1,906,695 - A4249_RS09545 0.39 -0.6
1,906,695 - A4249_RS09545 0.39 -0.7
1,906,979 + A4249_RS09545 0.81 -0.1
1,906,979 + A4249_RS09545 0.81 +0.0
1,906,982 + A4249_RS09545 0.81 +0.0
1,906,982 + A4249_RS09545 0.81 +0.2
1,906,982 + A4249_RS09545 0.81 +0.1
1,906,983 - A4249_RS09545 0.81 +0.3
1,906,983 - A4249_RS09545 0.81 +1.5
1,906,983 - A4249_RS09545 0.81 -0.6
1,907,093 + -0.1

Or see this region's nucleotide sequence