Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09415

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09405 and A4249_RS09410 overlap by 4 nucleotidesA4249_RS09410 and A4249_RS09415 are separated by 76 nucleotidesA4249_RS09415 and A4249_RS09420 are separated by 141 nucleotidesA4249_RS09420 and A4249_RS09425 overlap by 17 nucleotidesA4249_RS09425 and A4249_RS09430 overlap by 4 nucleotides A4249_RS09405: A4249_RS09405 - beta-N-acetylhexosaminidase, at 1,879,738 to 1,880,787 _RS09405 A4249_RS09410: A4249_RS09410 - SPOR domain-containing protein, at 1,880,784 to 1,881,560 _RS09410 A4249_RS09415: A4249_RS09415 - deoxyguanosinetriphosphate triphosphohydrolase, at 1,881,637 to 1,882,827 _RS09415 A4249_RS09420: A4249_RS09420 - iron-sulfur cluster insertion protein ErpA, at 1,882,969 to 1,883,286 _RS09420 A4249_RS09425: A4249_RS09425 - hypothetical protein, at 1,883,270 to 1,883,467 _RS09425 A4249_RS09430: A4249_RS09430 - PepSY domain-containing protein, at 1,883,464 to 1,884,656 _RS09430 Position (kb) 1881 1882 1883Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1880.768 kb on + strandat 1880.768 kb on + strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.965 kb on + strand, within A4249_RS09410at 1881.114 kb on - strand, within A4249_RS09410at 1881.519 kb on - strandat 1881.612 kb on + strandat 1881.612 kb on + strandat 1881.612 kb on + strandat 1881.612 kb on + strandat 1881.613 kb on - strandat 1881.613 kb on - strandat 1881.613 kb on - strandat 1881.685 kb on + strandat 1881.685 kb on + strandat 1881.685 kb on + strandat 1881.685 kb on + strandat 1881.686 kb on - strandat 1881.686 kb on - strandat 1881.686 kb on - strandat 1881.692 kb on + strandat 1881.693 kb on - strandat 1881.716 kb on + strandat 1881.716 kb on + strandat 1881.716 kb on + strandat 1881.716 kb on + strandat 1881.717 kb on - strandat 1881.717 kb on - strandat 1881.875 kb on + strand, within A4249_RS09415at 1881.875 kb on + strand, within A4249_RS09415at 1881.875 kb on + strand, within A4249_RS09415at 1881.876 kb on - strand, within A4249_RS09415at 1881.876 kb on - strand, within A4249_RS09415at 1881.876 kb on - strand, within A4249_RS09415at 1882.202 kb on + strand, within A4249_RS09415at 1882.202 kb on + strand, within A4249_RS09415at 1882.202 kb on + strand, within A4249_RS09415at 1882.203 kb on - strand, within A4249_RS09415at 1882.203 kb on - strand, within A4249_RS09415at 1882.203 kb on - strand, within A4249_RS09415at 1882.295 kb on + strand, within A4249_RS09415at 1882.295 kb on + strand, within A4249_RS09415at 1882.295 kb on + strand, within A4249_RS09415at 1882.640 kb on + strand, within A4249_RS09415at 1882.889 kb on + strandat 1882.889 kb on + strandat 1882.889 kb on + strandat 1882.889 kb on + strandat 1882.890 kb on - strandat 1882.890 kb on - strandat 1882.890 kb on - strandat 1882.890 kb on - strandat 1882.890 kb on - strandat 1882.890 kb on - strandat 1882.891 kb on + strandat 1882.891 kb on + strandat 1882.891 kb on + strandat 1882.891 kb on + strandat 1882.891 kb on + strandat 1882.891 kb on + strandat 1882.891 kb on + strandat 1882.891 kb on + strandat 1882.891 kb on + strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1882.892 kb on - strandat 1883.179 kb on - strand, within A4249_RS09420at 1883.449 kb on + strandat 1883.450 kb on - strandat 1883.450 kb on - strandat 1883.450 kb on - strandat 1883.450 kb on - strandat 1883.450 kb on - strandat 1883.498 kb on + strandat 1883.498 kb on + strandat 1883.498 kb on + strandat 1883.498 kb on + strandat 1883.499 kb on - strandat 1883.499 kb on - strandat 1883.499 kb on - strandat 1883.499 kb on - strandat 1883.499 kb on - strandat 1883.499 kb on - strandat 1883.573 kb on + strandat 1883.573 kb on + strandat 1883.618 kb on + strand, within A4249_RS09430at 1883.618 kb on + strand, within A4249_RS09430at 1883.618 kb on + strand, within A4249_RS09430at 1883.618 kb on + strand, within A4249_RS09430at 1883.619 kb on - strand, within A4249_RS09430at 1883.619 kb on - strand, within A4249_RS09430at 1883.619 kb on - strand, within A4249_RS09430at 1883.619 kb on - strand, within A4249_RS09430at 1883.619 kb on - strand, within A4249_RS09430at 1883.619 kb on - strand, within A4249_RS09430at 1883.685 kb on + strand, within A4249_RS09430at 1883.685 kb on + strand, within A4249_RS09430at 1883.685 kb on + strand, within A4249_RS09430at 1883.685 kb on + strand, within A4249_RS09430at 1883.686 kb on - strand, within A4249_RS09430at 1883.686 kb on - strand, within A4249_RS09430at 1883.686 kb on - strand, within A4249_RS09430at 1883.686 kb on - strand, within A4249_RS09430at 1883.686 kb on - strand, within A4249_RS09430at 1883.686 kb on - strand, within A4249_RS09430at 1883.726 kb on + strand, within A4249_RS09430at 1883.726 kb on + strand, within A4249_RS09430at 1883.726 kb on + strand, within A4249_RS09430at 1883.727 kb on - strand, within A4249_RS09430at 1883.727 kb on - strand, within A4249_RS09430at 1883.744 kb on + strand, within A4249_RS09430at 1883.745 kb on - strand, within A4249_RS09430

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,880,768 + +0.2
1,880,768 + -0.0
1,880,769 - -0.5
1,880,769 - -0.9
1,880,769 - +0.1
1,880,769 - +1.6
1,880,769 - +0.4
1,880,769 - +1.8
1,880,965 + A4249_RS09410 0.23 +0.3
1,881,114 - A4249_RS09410 0.42 +1.2
1,881,519 - +1.2
1,881,612 + -1.1
1,881,612 + -0.4
1,881,612 + -0.4
1,881,612 + +0.3
1,881,613 - +0.9
1,881,613 - -0.4
1,881,613 - -0.8
1,881,685 + +0.2
1,881,685 + +0.7
1,881,685 + +0.3
1,881,685 + -1.7
1,881,686 - +0.7
1,881,686 - +1.3
1,881,686 - +0.5
1,881,692 + +2.2
1,881,693 - +0.8
1,881,716 + +0.3
1,881,716 + -0.1
1,881,716 + +0.0
1,881,716 + -0.4
1,881,717 - -1.7
1,881,717 - +0.5
1,881,875 + A4249_RS09415 0.20 +0.2
1,881,875 + A4249_RS09415 0.20 -1.1
1,881,875 + A4249_RS09415 0.20 -0.6
1,881,876 - A4249_RS09415 0.20 -0.5
1,881,876 - A4249_RS09415 0.20 -0.4
1,881,876 - A4249_RS09415 0.20 +0.8
1,882,202 + A4249_RS09415 0.47 +1.0
1,882,202 + A4249_RS09415 0.47 +0.8
1,882,202 + A4249_RS09415 0.47 +1.4
1,882,203 - A4249_RS09415 0.48 -2.1
1,882,203 - A4249_RS09415 0.48 -0.2
1,882,203 - A4249_RS09415 0.48 +0.1
1,882,295 + A4249_RS09415 0.55 -0.4
1,882,295 + A4249_RS09415 0.55 +1.2
1,882,295 + A4249_RS09415 0.55 -0.6
1,882,640 + A4249_RS09415 0.84 -0.0
1,882,889 + +0.8
1,882,889 + -0.2
1,882,889 + +0.2
1,882,889 + -0.6
1,882,890 - +0.9
1,882,890 - +0.3
1,882,890 - +0.1
1,882,890 - +0.5
1,882,890 - +0.4
1,882,890 - +0.7
1,882,891 + +1.1
1,882,891 + -0.8
1,882,891 + -0.0
1,882,891 + +0.7
1,882,891 + +0.2
1,882,891 + +0.4
1,882,891 + +1.3
1,882,891 + -0.5
1,882,891 + +1.3
1,882,892 - -1.6
1,882,892 - +0.4
1,882,892 - -0.0
1,882,892 - -0.1
1,882,892 - +0.3
1,882,892 - -0.8
1,882,892 - +0.5
1,882,892 - -0.2
1,882,892 - +0.2
1,882,892 - -0.8
1,882,892 - +0.5
1,882,892 - -1.5
1,882,892 - +0.3
1,882,892 - +0.8
1,883,179 - A4249_RS09420 0.66 +1.2
1,883,449 + +0.3
1,883,450 - +0.2
1,883,450 - -1.0
1,883,450 - -0.7
1,883,450 - -0.4
1,883,450 - +0.6
1,883,498 + +0.3
1,883,498 + -0.4
1,883,498 + -0.5
1,883,498 + -0.3
1,883,499 - +0.0
1,883,499 - -0.8
1,883,499 - -1.1
1,883,499 - -1.0
1,883,499 - -0.0
1,883,499 - -0.4
1,883,573 + -0.4
1,883,573 + +0.1
1,883,618 + A4249_RS09430 0.13 -0.2
1,883,618 + A4249_RS09430 0.13 -0.3
1,883,618 + A4249_RS09430 0.13 -0.4
1,883,618 + A4249_RS09430 0.13 -1.2
1,883,619 - A4249_RS09430 0.13 -1.1
1,883,619 - A4249_RS09430 0.13 -0.1
1,883,619 - A4249_RS09430 0.13 +0.4
1,883,619 - A4249_RS09430 0.13 -0.9
1,883,619 - A4249_RS09430 0.13 -0.0
1,883,619 - A4249_RS09430 0.13 -0.9
1,883,685 + A4249_RS09430 0.19 -1.9
1,883,685 + A4249_RS09430 0.19 -0.1
1,883,685 + A4249_RS09430 0.19 -0.1
1,883,685 + A4249_RS09430 0.19 -0.0
1,883,686 - A4249_RS09430 0.19 +0.5
1,883,686 - A4249_RS09430 0.19 -0.2
1,883,686 - A4249_RS09430 0.19 -0.3
1,883,686 - A4249_RS09430 0.19 -0.1
1,883,686 - A4249_RS09430 0.19 +0.4
1,883,686 - A4249_RS09430 0.19 +0.8
1,883,726 + A4249_RS09430 0.22 -1.5
1,883,726 + A4249_RS09430 0.22 -2.8
1,883,726 + A4249_RS09430 0.22 -1.2
1,883,727 - A4249_RS09430 0.22 -0.2
1,883,727 - A4249_RS09430 0.22 +0.1
1,883,744 + A4249_RS09430 0.23 +1.5
1,883,745 - A4249_RS09430 0.24 -0.2

Or see this region's nucleotide sequence