Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07255

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07250 and A4249_RS07255 are separated by 122 nucleotidesA4249_RS07255 and A4249_RS07260 are separated by 72 nucleotides A4249_RS07250: A4249_RS07250 - NAD-dependent DNA ligase LigA, at 1,451,192 to 1,453,525 _RS07250 A4249_RS07255: A4249_RS07255 - DUF2147 domain-containing protein, at 1,453,648 to 1,454,070 _RS07255 A4249_RS07260: A4249_RS07260 - aldo/keto reductase, at 1,454,143 to 1,455,129 _RS07260 Position (kb) 1453 1454 1455Strain fitness (log2 ratio) -2 -1 0 1 2at 1453.534 kb on + strandat 1453.534 kb on + strandat 1453.534 kb on + strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.647 kb on + strandat 1453.647 kb on + strandat 1453.648 kb on - strandat 1453.648 kb on - strandat 1453.648 kb on - strandat 1453.746 kb on + strand, within A4249_RS07255at 1453.746 kb on + strand, within A4249_RS07255at 1453.747 kb on - strand, within A4249_RS07255at 1453.747 kb on - strand, within A4249_RS07255at 1453.794 kb on + strand, within A4249_RS07255at 1453.932 kb on + strand, within A4249_RS07255at 1453.932 kb on + strand, within A4249_RS07255at 1453.933 kb on - strand, within A4249_RS07255at 1453.933 kb on - strand, within A4249_RS07255at 1453.941 kb on + strand, within A4249_RS07255at 1453.945 kb on + strand, within A4249_RS07255at 1453.945 kb on + strand, within A4249_RS07255at 1453.945 kb on + strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.969 kb on + strand, within A4249_RS07255at 1453.969 kb on + strand, within A4249_RS07255at 1454.012 kb on + strand, within A4249_RS07255at 1454.036 kb on + strandat 1454.037 kb on - strandat 1454.068 kb on + strandat 1454.088 kb on + strandat 1454.088 kb on + strandat 1454.088 kb on + strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.139 kb on + strandat 1454.139 kb on + strandat 1454.139 kb on + strandat 1454.139 kb on + strandat 1454.140 kb on - strandat 1454.177 kb on + strandat 1454.178 kb on - strandat 1454.363 kb on - strand, within A4249_RS07260at 1454.363 kb on - strand, within A4249_RS07260at 1454.371 kb on - strand, within A4249_RS07260at 1454.526 kb on - strand, within A4249_RS07260at 1454.600 kb on + strand, within A4249_RS07260at 1454.600 kb on + strand, within A4249_RS07260at 1454.601 kb on - strand, within A4249_RS07260at 1454.601 kb on - strand, within A4249_RS07260at 1454.601 kb on - strand, within A4249_RS07260at 1454.765 kb on + strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.815 kb on - strand, within A4249_RS07260at 1454.851 kb on - strand, within A4249_RS07260at 1454.851 kb on - strand, within A4249_RS07260at 1454.873 kb on + strand, within A4249_RS07260at 1454.873 kb on + strand, within A4249_RS07260at 1454.874 kb on - strand, within A4249_RS07260at 1454.874 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.964 kb on - strand, within A4249_RS07260at 1454.964 kb on - strand, within A4249_RS07260at 1455.051 kb on - strandat 1455.051 kb on - strandat 1455.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,453,534 + -0.4
1,453,534 + -1.1
1,453,534 + -0.1
1,453,535 - +0.2
1,453,535 - +2.5
1,453,535 - -0.3
1,453,535 - +0.8
1,453,535 - +0.5
1,453,535 - -0.2
1,453,647 + +0.1
1,453,647 + +0.0
1,453,648 - +1.4
1,453,648 - +0.5
1,453,648 - +0.0
1,453,746 + A4249_RS07255 0.23 +0.8
1,453,746 + A4249_RS07255 0.23 -1.7
1,453,747 - A4249_RS07255 0.23 -0.7
1,453,747 - A4249_RS07255 0.23 +0.3
1,453,794 + A4249_RS07255 0.35 -1.0
1,453,932 + A4249_RS07255 0.67 +0.1
1,453,932 + A4249_RS07255 0.67 -0.9
1,453,933 - A4249_RS07255 0.67 +0.4
1,453,933 - A4249_RS07255 0.67 -0.2
1,453,941 + A4249_RS07255 0.69 -0.4
1,453,945 + A4249_RS07255 0.70 +1.0
1,453,945 + A4249_RS07255 0.70 +0.2
1,453,945 + A4249_RS07255 0.70 +1.7
1,453,946 - A4249_RS07255 0.70 -0.7
1,453,946 - A4249_RS07255 0.70 +0.5
1,453,946 - A4249_RS07255 0.70 +0.9
1,453,946 - A4249_RS07255 0.70 -0.3
1,453,946 - A4249_RS07255 0.70 +0.6
1,453,969 + A4249_RS07255 0.76 +0.1
1,453,969 + A4249_RS07255 0.76 -1.1
1,454,012 + A4249_RS07255 0.86 -0.1
1,454,036 + -2.7
1,454,037 - +0.7
1,454,068 + -0.1
1,454,088 + +0.2
1,454,088 + -0.8
1,454,088 + +0.4
1,454,089 - -0.4
1,454,089 - -1.5
1,454,089 - +0.2
1,454,089 - +0.3
1,454,089 - +0.0
1,454,089 - +0.8
1,454,089 - +0.1
1,454,089 - +0.4
1,454,089 - -0.4
1,454,089 - +0.5
1,454,139 + +0.6
1,454,139 + -0.2
1,454,139 + -0.5
1,454,139 + -0.9
1,454,140 - +0.0
1,454,177 + -0.3
1,454,178 - -1.2
1,454,363 - A4249_RS07260 0.22 -0.0
1,454,363 - A4249_RS07260 0.22 +0.0
1,454,371 - A4249_RS07260 0.23 -1.3
1,454,526 - A4249_RS07260 0.39 +0.3
1,454,600 + A4249_RS07260 0.46 -0.7
1,454,600 + A4249_RS07260 0.46 -0.6
1,454,601 - A4249_RS07260 0.46 -0.2
1,454,601 - A4249_RS07260 0.46 -1.0
1,454,601 - A4249_RS07260 0.46 +0.6
1,454,765 + A4249_RS07260 0.63 -0.1
1,454,766 - A4249_RS07260 0.63 -1.3
1,454,766 - A4249_RS07260 0.63 +1.2
1,454,766 - A4249_RS07260 0.63 -1.0
1,454,766 - A4249_RS07260 0.63 -0.6
1,454,766 - A4249_RS07260 0.63 +0.2
1,454,766 - A4249_RS07260 0.63 +1.2
1,454,766 - A4249_RS07260 0.63 +0.8
1,454,766 - A4249_RS07260 0.63 +0.2
1,454,768 + A4249_RS07260 0.63 +0.5
1,454,768 + A4249_RS07260 0.63 -1.4
1,454,768 + A4249_RS07260 0.63 +0.1
1,454,768 + A4249_RS07260 0.63 -0.4
1,454,768 + A4249_RS07260 0.63 +0.4
1,454,769 - A4249_RS07260 0.63 -1.0
1,454,769 - A4249_RS07260 0.63 +0.0
1,454,769 - A4249_RS07260 0.63 +0.3
1,454,769 - A4249_RS07260 0.63 -0.1
1,454,815 - A4249_RS07260 0.68 +0.4
1,454,851 - A4249_RS07260 0.72 +0.8
1,454,851 - A4249_RS07260 0.72 -0.0
1,454,873 + A4249_RS07260 0.74 -1.3
1,454,873 + A4249_RS07260 0.74 +1.2
1,454,874 - A4249_RS07260 0.74 -0.4
1,454,874 - A4249_RS07260 0.74 -0.5
1,454,953 - A4249_RS07260 0.82 +1.2
1,454,953 - A4249_RS07260 0.82 +0.1
1,454,953 - A4249_RS07260 0.82 +0.4
1,454,953 - A4249_RS07260 0.82 -0.4
1,454,964 - A4249_RS07260 0.83 +1.3
1,454,964 - A4249_RS07260 0.83 +1.3
1,455,051 - +0.0
1,455,051 - -1.0
1,455,051 - -0.7

Or see this region's nucleotide sequence