Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06590

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06580 and A4249_RS06585 overlap by 4 nucleotidesA4249_RS06585 and A4249_RS06590 are separated by 2 nucleotides A4249_RS06580: A4249_RS06580 - HWE histidine kinase domain-containing protein, at 1,340,660 to 1,342,168 _RS06580 A4249_RS06585: A4249_RS06585 - response regulator, at 1,342,165 to 1,342,542 _RS06585 A4249_RS06590: A4249_RS06590 - hypothetical protein, at 1,342,545 to 1,343,090 _RS06590 Position (kb) 1342 1343 1344Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1341.803 kb on + strand, within A4249_RS06580at 1341.820 kb on - strand, within A4249_RS06580at 1341.911 kb on + strand, within A4249_RS06580at 1341.926 kb on - strand, within A4249_RS06580at 1342.022 kb on - strandat 1342.022 kb on - strandat 1342.546 kb on + strandat 1342.547 kb on - strandat 1342.591 kb on + strandat 1342.592 kb on - strandat 1342.592 kb on - strandat 1342.592 kb on - strandat 1342.592 kb on - strandat 1342.592 kb on - strandat 1342.632 kb on + strand, within A4249_RS06590at 1342.632 kb on + strand, within A4249_RS06590at 1342.632 kb on + strand, within A4249_RS06590at 1342.632 kb on + strand, within A4249_RS06590at 1342.632 kb on + strand, within A4249_RS06590at 1342.633 kb on - strand, within A4249_RS06590at 1342.633 kb on - strand, within A4249_RS06590at 1342.633 kb on - strand, within A4249_RS06590at 1342.737 kb on + strand, within A4249_RS06590at 1342.737 kb on + strand, within A4249_RS06590at 1342.738 kb on - strand, within A4249_RS06590at 1342.738 kb on - strand, within A4249_RS06590at 1342.738 kb on - strand, within A4249_RS06590at 1342.739 kb on + strand, within A4249_RS06590at 1342.739 kb on + strand, within A4249_RS06590at 1342.739 kb on + strand, within A4249_RS06590at 1342.739 kb on + strand, within A4249_RS06590at 1342.740 kb on - strand, within A4249_RS06590at 1342.740 kb on - strand, within A4249_RS06590at 1342.740 kb on - strand, within A4249_RS06590at 1342.740 kb on - strand, within A4249_RS06590at 1342.740 kb on - strand, within A4249_RS06590at 1342.764 kb on + strand, within A4249_RS06590at 1342.764 kb on + strand, within A4249_RS06590at 1342.764 kb on + strand, within A4249_RS06590at 1342.764 kb on + strand, within A4249_RS06590at 1342.764 kb on + strand, within A4249_RS06590at 1342.765 kb on - strand, within A4249_RS06590at 1342.803 kb on + strand, within A4249_RS06590at 1342.804 kb on - strand, within A4249_RS06590at 1342.804 kb on - strand, within A4249_RS06590at 1342.804 kb on - strand, within A4249_RS06590at 1342.823 kb on + strand, within A4249_RS06590at 1342.823 kb on + strand, within A4249_RS06590at 1342.824 kb on - strand, within A4249_RS06590at 1342.824 kb on - strand, within A4249_RS06590at 1342.843 kb on + strand, within A4249_RS06590at 1342.844 kb on - strand, within A4249_RS06590at 1342.858 kb on + strand, within A4249_RS06590at 1342.859 kb on - strand, within A4249_RS06590at 1342.957 kb on + strand, within A4249_RS06590at 1342.957 kb on + strand, within A4249_RS06590at 1342.957 kb on + strand, within A4249_RS06590at 1342.957 kb on + strand, within A4249_RS06590at 1342.957 kb on + strand, within A4249_RS06590at 1342.957 kb on + strand, within A4249_RS06590at 1342.957 kb on + strand, within A4249_RS06590at 1342.957 kb on + strand, within A4249_RS06590at 1342.958 kb on - strand, within A4249_RS06590at 1342.958 kb on - strand, within A4249_RS06590at 1342.958 kb on - strand, within A4249_RS06590at 1343.086 kb on + strandat 1343.086 kb on + strandat 1343.086 kb on + strandat 1343.086 kb on + strandat 1343.087 kb on - strandat 1343.087 kb on - strandat 1343.087 kb on - strandat 1343.087 kb on - strandat 1343.087 kb on - strandat 1343.104 kb on + strandat 1343.104 kb on + strandat 1343.104 kb on + strandat 1343.105 kb on - strandat 1343.105 kb on - strandat 1343.105 kb on - strandat 1343.105 kb on - strandat 1343.105 kb on - strandat 1343.105 kb on - strandat 1343.229 kb on + strandat 1343.229 kb on + strandat 1343.229 kb on + strandat 1343.229 kb on + strandat 1343.230 kb on - strandat 1343.230 kb on - strandat 1343.230 kb on - strandat 1343.234 kb on + strandat 1343.234 kb on + strandat 1343.234 kb on + strandat 1343.234 kb on + strandat 1343.235 kb on - strandat 1343.235 kb on - strandat 1343.235 kb on - strandat 1343.235 kb on - strandat 1343.235 kb on - strandat 1343.235 kb on - strandat 1343.307 kb on + strandat 1343.307 kb on + strandat 1343.307 kb on + strandat 1343.307 kb on + strandat 1343.307 kb on + strandat 1343.308 kb on - strandat 1343.308 kb on - strandat 1343.308 kb on - strandat 1343.308 kb on - strandat 1343.308 kb on - strandat 1343.315 kb on + strandat 1343.416 kb on + strandat 1343.416 kb on + strandat 1343.417 kb on - strandat 1343.417 kb on - strandat 1343.417 kb on - strandat 1343.417 kb on - strandat 1343.420 kb on + strandat 1343.420 kb on + strandat 1343.421 kb on - strandat 1343.421 kb on - strandat 1343.480 kb on + strandat 1343.480 kb on + strandat 1343.480 kb on + strandat 1343.480 kb on + strandat 1343.481 kb on - strandat 1343.481 kb on - strandat 1343.481 kb on - strandat 1343.481 kb on - strandat 1343.481 kb on - strandat 1343.505 kb on + strandat 1343.505 kb on + strandat 1343.505 kb on + strandat 1343.505 kb on + strandat 1343.506 kb on - strandat 1343.506 kb on - strandat 1343.506 kb on - strandat 1343.506 kb on - strandat 1343.506 kb on - strandat 1343.506 kb on - strandat 1343.536 kb on + strandat 1343.657 kb on + strandat 1343.657 kb on + strandat 1343.657 kb on + strandat 1343.657 kb on + strandat 1343.657 kb on + strandat 1343.657 kb on + strandat 1343.657 kb on + strandat 1343.657 kb on + strandat 1343.657 kb on + strandat 1343.657 kb on + strandat 1343.658 kb on - strandat 1343.658 kb on - strandat 1343.658 kb on - strandat 1343.658 kb on - strandat 1343.658 kb on - strandat 1343.658 kb on - strandat 1343.658 kb on - strandat 1343.658 kb on - strandat 1343.658 kb on - strandat 1343.659 kb on + strandat 1343.659 kb on + strandat 1343.659 kb on + strandat 1343.660 kb on - strandat 1343.660 kb on - strandat 1343.660 kb on - strandat 1343.660 kb on - strandat 1343.667 kb on + strandat 1343.667 kb on + strandat 1343.667 kb on + strandat 1343.667 kb on + strandat 1343.667 kb on + strandat 1343.731 kb on + strandat 1343.731 kb on + strandat 1343.731 kb on + strandat 1343.732 kb on - strandat 1343.732 kb on - strandat 1343.732 kb on - strandat 1343.732 kb on - strandat 1343.732 kb on - strandat 1343.732 kb on - strandat 1343.732 kb on - strandat 1343.746 kb on + strandat 1343.746 kb on + strandat 1343.747 kb on - strandat 1343.747 kb on - strandat 1343.747 kb on - strandat 1343.747 kb on - strandat 1343.747 kb on - strandat 1343.842 kb on + strandat 1343.842 kb on + strandat 1343.842 kb on + strandat 1343.843 kb on - strandat 1343.843 kb on - strandat 1343.843 kb on - strandat 1343.843 kb on - strandat 1343.843 kb on - strandat 1343.843 kb on - strandat 1343.843 kb on - strandat 1343.843 kb on - strandat 1343.843 kb on - strandat 1343.843 kb on - strandat 1343.872 kb on + strandat 1343.885 kb on + strandat 1343.885 kb on + strandat 1343.930 kb on + strandat 1343.930 kb on + strandat 1343.931 kb on - strandat 1343.931 kb on - strandat 1344.088 kb on + strandat 1344.089 kb on - strandat 1344.089 kb on - strandat 1344.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,341,803 + A4249_RS06580 0.76 -1.0
1,341,820 - A4249_RS06580 0.77 -0.2
1,341,911 + A4249_RS06580 0.83 +0.2
1,341,926 - A4249_RS06580 0.84 +0.8
1,342,022 - -0.1
1,342,022 - +1.0
1,342,546 + +0.3
1,342,547 - +0.5
1,342,591 + +0.0
1,342,592 - +0.2
1,342,592 - -0.4
1,342,592 - -0.9
1,342,592 - +0.8
1,342,592 - +0.6
1,342,632 + A4249_RS06590 0.16 +0.6
1,342,632 + A4249_RS06590 0.16 -0.2
1,342,632 + A4249_RS06590 0.16 -0.8
1,342,632 + A4249_RS06590 0.16 -1.0
1,342,632 + A4249_RS06590 0.16 -0.8
1,342,633 - A4249_RS06590 0.16 +0.9
1,342,633 - A4249_RS06590 0.16 -0.2
1,342,633 - A4249_RS06590 0.16 +1.8
1,342,737 + A4249_RS06590 0.35 -1.7
1,342,737 + A4249_RS06590 0.35 -0.8
1,342,738 - A4249_RS06590 0.35 -0.1
1,342,738 - A4249_RS06590 0.35 -0.5
1,342,738 - A4249_RS06590 0.35 +0.0
1,342,739 + A4249_RS06590 0.36 -0.6
1,342,739 + A4249_RS06590 0.36 -0.3
1,342,739 + A4249_RS06590 0.36 +0.3
1,342,739 + A4249_RS06590 0.36 -0.2
1,342,740 - A4249_RS06590 0.36 -1.0
1,342,740 - A4249_RS06590 0.36 +0.5
1,342,740 - A4249_RS06590 0.36 +0.2
1,342,740 - A4249_RS06590 0.36 -1.1
1,342,740 - A4249_RS06590 0.36 -0.5
1,342,764 + A4249_RS06590 0.40 +0.7
1,342,764 + A4249_RS06590 0.40 +0.4
1,342,764 + A4249_RS06590 0.40 +0.2
1,342,764 + A4249_RS06590 0.40 +1.3
1,342,764 + A4249_RS06590 0.40 -0.7
1,342,765 - A4249_RS06590 0.40 -1.2
1,342,803 + A4249_RS06590 0.47 -0.5
1,342,804 - A4249_RS06590 0.47 +0.8
1,342,804 - A4249_RS06590 0.47 -1.3
1,342,804 - A4249_RS06590 0.47 +1.0
1,342,823 + A4249_RS06590 0.51 -0.0
1,342,823 + A4249_RS06590 0.51 +0.9
1,342,824 - A4249_RS06590 0.51 -0.0
1,342,824 - A4249_RS06590 0.51 +1.2
1,342,843 + A4249_RS06590 0.55 +0.5
1,342,844 - A4249_RS06590 0.55 +1.4
1,342,858 + A4249_RS06590 0.57 +0.1
1,342,859 - A4249_RS06590 0.58 -0.7
1,342,957 + A4249_RS06590 0.75 -0.2
1,342,957 + A4249_RS06590 0.75 -0.7
1,342,957 + A4249_RS06590 0.75 +0.9
1,342,957 + A4249_RS06590 0.75 -0.2
1,342,957 + A4249_RS06590 0.75 -1.7
1,342,957 + A4249_RS06590 0.75 +0.5
1,342,957 + A4249_RS06590 0.75 -0.9
1,342,957 + A4249_RS06590 0.75 -1.1
1,342,958 - A4249_RS06590 0.76 +0.9
1,342,958 - A4249_RS06590 0.76 -0.3
1,342,958 - A4249_RS06590 0.76 -0.7
1,343,086 + +1.2
1,343,086 + +0.5
1,343,086 + +1.2
1,343,086 + -0.4
1,343,087 - +3.0
1,343,087 - -0.9
1,343,087 - +0.0
1,343,087 - -0.7
1,343,087 - -0.1
1,343,104 + +0.5
1,343,104 + -0.5
1,343,104 + -0.4
1,343,105 - -0.2
1,343,105 - -0.6
1,343,105 - -0.5
1,343,105 - -0.5
1,343,105 - -0.8
1,343,105 - -0.4
1,343,229 + -0.6
1,343,229 + +0.3
1,343,229 + -0.1
1,343,229 + -0.6
1,343,230 - -0.9
1,343,230 - -0.0
1,343,230 - -0.5
1,343,234 + +1.6
1,343,234 + +1.5
1,343,234 + +1.6
1,343,234 + +0.6
1,343,235 - -2.0
1,343,235 - +1.3
1,343,235 - +1.8
1,343,235 - -0.3
1,343,235 - +0.3
1,343,235 - -0.1
1,343,307 + -0.7
1,343,307 + -0.8
1,343,307 + +0.9
1,343,307 + -0.2
1,343,307 + -0.3
1,343,308 - -0.8
1,343,308 - -1.0
1,343,308 - +0.5
1,343,308 - +0.7
1,343,308 - -0.8
1,343,315 + +1.0
1,343,416 + +0.5
1,343,416 + -0.9
1,343,417 - -1.5
1,343,417 - +0.4
1,343,417 - -1.1
1,343,417 - -0.7
1,343,420 + +0.4
1,343,420 + -0.0
1,343,421 - -0.6
1,343,421 - -0.8
1,343,480 + -1.1
1,343,480 + -1.1
1,343,480 + -0.4
1,343,480 + -0.0
1,343,481 - +1.0
1,343,481 - -0.0
1,343,481 - -0.5
1,343,481 - -0.5
1,343,481 - -1.7
1,343,505 + +0.5
1,343,505 + -0.4
1,343,505 + +1.6
1,343,505 + +0.6
1,343,506 - -0.8
1,343,506 - -0.1
1,343,506 - +0.3
1,343,506 - +1.0
1,343,506 - -0.7
1,343,506 - +0.2
1,343,536 + +0.1
1,343,657 + -0.1
1,343,657 + -1.0
1,343,657 + -1.7
1,343,657 + -0.0
1,343,657 + +1.5
1,343,657 + +2.0
1,343,657 + -0.0
1,343,657 + -1.0
1,343,657 + -0.6
1,343,657 + -1.2
1,343,658 - +0.5
1,343,658 - -0.2
1,343,658 - -0.2
1,343,658 - +0.1
1,343,658 - +0.7
1,343,658 - +0.1
1,343,658 - +0.7
1,343,658 - -0.0
1,343,658 - -0.5
1,343,659 + +1.2
1,343,659 + -0.8
1,343,659 + -1.4
1,343,660 - +0.7
1,343,660 - -0.6
1,343,660 - -0.9
1,343,660 - -0.0
1,343,667 + +0.6
1,343,667 + -1.4
1,343,667 + +0.9
1,343,667 + -0.0
1,343,667 + +1.0
1,343,731 + +0.1
1,343,731 + -0.1
1,343,731 + +0.5
1,343,732 - -0.4
1,343,732 - +0.1
1,343,732 - -0.5
1,343,732 - -1.2
1,343,732 - +0.9
1,343,732 - -0.2
1,343,732 - +0.2
1,343,746 + +0.8
1,343,746 + -0.7
1,343,747 - -0.2
1,343,747 - +0.7
1,343,747 - +0.5
1,343,747 - +0.1
1,343,747 - +0.6
1,343,842 + -0.1
1,343,842 + -1.0
1,343,842 + -0.3
1,343,843 - -0.0
1,343,843 - -0.0
1,343,843 - +0.7
1,343,843 - +0.3
1,343,843 - -0.7
1,343,843 - +0.7
1,343,843 - -0.8
1,343,843 - -0.7
1,343,843 - +0.1
1,343,843 - +0.5
1,343,872 + -0.2
1,343,885 + -0.2
1,343,885 + -0.5
1,343,930 + +0.0
1,343,930 + +0.5
1,343,931 - -0.0
1,343,931 - +0.2
1,344,088 + -0.4
1,344,089 - -0.9
1,344,089 - -0.8
1,344,089 - -0.9

Or see this region's nucleotide sequence