Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06555

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06545 and A4249_RS06550 are separated by 40 nucleotidesA4249_RS06550 and A4249_RS06555 are separated by 15 nucleotidesA4249_RS06555 and A4249_RS06560 overlap by 1 nucleotides A4249_RS06545: A4249_RS06545 - ferredoxin--NADP reductase, at 1,334,332 to 1,335,147 _RS06545 A4249_RS06550: A4249_RS06550 - chorismate mutase, at 1,335,188 to 1,335,520 _RS06550 A4249_RS06555: A4249_RS06555 - Hpt domain-containing protein, at 1,335,536 to 1,335,889 _RS06555 A4249_RS06560: A4249_RS06560 - amino acid permease, at 1,335,889 to 1,337,301 _RS06560 Position (kb) 1335 1336Strain fitness (log2 ratio) -2 -1 0 1 2at 1335.320 kb on + strand, within A4249_RS06550at 1335.320 kb on + strand, within A4249_RS06550at 1335.320 kb on + strand, within A4249_RS06550at 1335.320 kb on + strand, within A4249_RS06550at 1335.320 kb on + strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.321 kb on - strand, within A4249_RS06550at 1335.500 kb on + strandat 1335.501 kb on - strandat 1335.501 kb on - strandat 1335.537 kb on + strandat 1335.537 kb on + strandat 1335.537 kb on + strandat 1335.538 kb on - strandat 1335.538 kb on - strandat 1335.538 kb on - strandat 1335.573 kb on + strand, within A4249_RS06555at 1335.721 kb on + strand, within A4249_RS06555at 1335.721 kb on + strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.722 kb on - strand, within A4249_RS06555at 1335.947 kb on + strandat 1335.947 kb on + strandat 1335.947 kb on + strandat 1335.947 kb on + strandat 1335.947 kb on + strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1335.948 kb on - strandat 1336.258 kb on + strand, within A4249_RS06560at 1336.258 kb on + strand, within A4249_RS06560at 1336.493 kb on + strand, within A4249_RS06560at 1336.494 kb on - strand, within A4249_RS06560at 1336.595 kb on + strand, within A4249_RS06560at 1336.595 kb on + strand, within A4249_RS06560at 1336.595 kb on + strand, within A4249_RS06560at 1336.595 kb on + strand, within A4249_RS06560at 1336.595 kb on + strand, within A4249_RS06560at 1336.595 kb on + strand, within A4249_RS06560at 1336.596 kb on - strand, within A4249_RS06560at 1336.596 kb on - strand, within A4249_RS06560at 1336.596 kb on - strand, within A4249_RS06560at 1336.596 kb on - strand, within A4249_RS06560

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,335,320 + A4249_RS06550 0.40 +0.2
1,335,320 + A4249_RS06550 0.40 +0.3
1,335,320 + A4249_RS06550 0.40 -0.0
1,335,320 + A4249_RS06550 0.40 -0.4
1,335,320 + A4249_RS06550 0.40 +0.2
1,335,321 - A4249_RS06550 0.40 +1.0
1,335,321 - A4249_RS06550 0.40 -0.2
1,335,321 - A4249_RS06550 0.40 -0.3
1,335,321 - A4249_RS06550 0.40 -0.0
1,335,321 - A4249_RS06550 0.40 -0.4
1,335,321 - A4249_RS06550 0.40 -0.0
1,335,500 + +0.1
1,335,501 - +0.2
1,335,501 - +0.8
1,335,537 + -0.7
1,335,537 + +0.1
1,335,537 + -0.4
1,335,538 - +1.5
1,335,538 - +0.1
1,335,538 - -0.2
1,335,573 + A4249_RS06555 0.10 +0.2
1,335,721 + A4249_RS06555 0.52 +0.8
1,335,721 + A4249_RS06555 0.52 +0.9
1,335,722 - A4249_RS06555 0.53 -0.9
1,335,722 - A4249_RS06555 0.53 +1.2
1,335,722 - A4249_RS06555 0.53 +0.2
1,335,722 - A4249_RS06555 0.53 -1.9
1,335,722 - A4249_RS06555 0.53 -0.9
1,335,722 - A4249_RS06555 0.53 +0.7
1,335,722 - A4249_RS06555 0.53 -1.3
1,335,947 + +2.0
1,335,947 + +0.8
1,335,947 + +0.9
1,335,947 + -0.8
1,335,947 + -0.1
1,335,948 - -0.8
1,335,948 - +0.3
1,335,948 - +0.5
1,335,948 - +0.2
1,335,948 - +0.1
1,335,948 - +0.3
1,335,948 - +1.4
1,335,948 - -0.4
1,336,258 + A4249_RS06560 0.26 -1.0
1,336,258 + A4249_RS06560 0.26 +0.9
1,336,493 + A4249_RS06560 0.43 +0.2
1,336,494 - A4249_RS06560 0.43 +0.2
1,336,595 + A4249_RS06560 0.50 +1.4
1,336,595 + A4249_RS06560 0.50 +0.5
1,336,595 + A4249_RS06560 0.50 +1.5
1,336,595 + A4249_RS06560 0.50 +0.8
1,336,595 + A4249_RS06560 0.50 +0.9
1,336,595 + A4249_RS06560 0.50 +1.2
1,336,596 - A4249_RS06560 0.50 -1.3
1,336,596 - A4249_RS06560 0.50 -0.6
1,336,596 - A4249_RS06560 0.50 +1.4
1,336,596 - A4249_RS06560 0.50 -0.7

Or see this region's nucleotide sequence