Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05920

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05905 and A4249_RS05910 overlap by 4 nucleotidesA4249_RS05910 and A4249_RS05915 overlap by 4 nucleotidesA4249_RS05915 and A4249_RS05920 are separated by 39 nucleotidesA4249_RS05920 and A4249_RS05925 are separated by 101 nucleotidesA4249_RS05925 and A4249_RS05930 are separated by 2 nucleotides A4249_RS05905: A4249_RS05905 - class I poly(R)-hydroxyalkanoic acid synthase, at 1,207,992 to 1,209,932 _RS05905 A4249_RS05910: A4249_RS05910 - hypothetical protein, at 1,209,929 to 1,210,306 _RS05910 A4249_RS05915: A4249_RS05915 - peptide-methionine (R)-S-oxide reductase MsrB, at 1,210,303 to 1,210,806 _RS05915 A4249_RS05920: A4249_RS05920 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,210,846 to 1,211,796 _RS05920 A4249_RS05925: A4249_RS05925 - 30S ribosomal protein S9, at 1,211,898 to 1,212,392 _RS05925 A4249_RS05930: A4249_RS05930 - 50S ribosomal protein L13, at 1,212,395 to 1,212,871 _RS05930 Position (kb) 1210 1211 1212Strain fitness (log2 ratio) -2 -1 0 1at 1209.912 kb on + strandat 1209.912 kb on + strandat 1209.912 kb on + strandat 1209.913 kb on - strandat 1209.913 kb on - strandat 1209.913 kb on - strandat 1209.913 kb on - strandat 1209.913 kb on - strandat 1210.037 kb on + strand, within A4249_RS05910at 1210.037 kb on + strand, within A4249_RS05910at 1210.037 kb on + strand, within A4249_RS05910at 1210.037 kb on + strand, within A4249_RS05910at 1210.037 kb on + strand, within A4249_RS05910at 1210.037 kb on + strand, within A4249_RS05910at 1210.038 kb on - strand, within A4249_RS05910at 1210.038 kb on - strand, within A4249_RS05910at 1210.038 kb on - strand, within A4249_RS05910at 1210.038 kb on - strand, within A4249_RS05910at 1210.038 kb on - strand, within A4249_RS05910at 1210.038 kb on - strand, within A4249_RS05910at 1210.038 kb on - strand, within A4249_RS05910at 1210.038 kb on - strand, within A4249_RS05910at 1210.038 kb on - strand, within A4249_RS05910at 1210.150 kb on + strand, within A4249_RS05910at 1210.150 kb on + strand, within A4249_RS05910at 1210.150 kb on + strand, within A4249_RS05910at 1210.151 kb on - strand, within A4249_RS05910at 1210.151 kb on - strand, within A4249_RS05910at 1210.179 kb on + strand, within A4249_RS05910at 1210.179 kb on + strand, within A4249_RS05910at 1210.179 kb on + strand, within A4249_RS05910at 1210.180 kb on - strand, within A4249_RS05910at 1210.229 kb on + strand, within A4249_RS05910at 1210.229 kb on + strand, within A4249_RS05910at 1210.230 kb on - strand, within A4249_RS05910at 1210.415 kb on + strand, within A4249_RS05915at 1210.415 kb on + strand, within A4249_RS05915at 1210.415 kb on + strand, within A4249_RS05915at 1210.416 kb on - strand, within A4249_RS05915at 1210.416 kb on - strand, within A4249_RS05915at 1210.416 kb on - strand, within A4249_RS05915at 1210.416 kb on - strand, within A4249_RS05915at 1210.481 kb on + strand, within A4249_RS05915at 1210.481 kb on + strand, within A4249_RS05915at 1210.481 kb on + strand, within A4249_RS05915at 1210.481 kb on + strand, within A4249_RS05915at 1210.481 kb on + strand, within A4249_RS05915at 1210.481 kb on + strand, within A4249_RS05915at 1210.481 kb on + strand, within A4249_RS05915at 1210.481 kb on + strand, within A4249_RS05915at 1210.481 kb on + strand, within A4249_RS05915at 1210.482 kb on - strand, within A4249_RS05915at 1210.482 kb on - strand, within A4249_RS05915at 1210.482 kb on - strand, within A4249_RS05915at 1210.482 kb on - strand, within A4249_RS05915at 1210.482 kb on - strand, within A4249_RS05915at 1210.482 kb on - strand, within A4249_RS05915at 1210.482 kb on - strand, within A4249_RS05915at 1210.598 kb on + strand, within A4249_RS05915at 1210.599 kb on - strand, within A4249_RS05915at 1210.648 kb on + strand, within A4249_RS05915at 1210.649 kb on - strand, within A4249_RS05915at 1210.700 kb on + strand, within A4249_RS05915at 1210.701 kb on - strand, within A4249_RS05915at 1210.701 kb on - strand, within A4249_RS05915at 1210.815 kb on + strandat 1210.816 kb on - strandat 1210.816 kb on - strandat 1210.816 kb on - strandat 1210.816 kb on - strandat 1211.084 kb on + strand, within A4249_RS05920at 1211.084 kb on + strand, within A4249_RS05920at 1211.084 kb on + strand, within A4249_RS05920at 1211.085 kb on - strand, within A4249_RS05920at 1211.085 kb on - strand, within A4249_RS05920at 1211.085 kb on - strand, within A4249_RS05920at 1211.085 kb on - strand, within A4249_RS05920at 1211.180 kb on + strand, within A4249_RS05920at 1211.180 kb on + strand, within A4249_RS05920at 1211.180 kb on + strand, within A4249_RS05920at 1211.180 kb on + strand, within A4249_RS05920at 1211.181 kb on - strand, within A4249_RS05920at 1211.200 kb on - strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.273 kb on + strand, within A4249_RS05920at 1211.273 kb on + strand, within A4249_RS05920at 1211.282 kb on + strand, within A4249_RS05920at 1211.282 kb on + strand, within A4249_RS05920at 1211.357 kb on + strand, within A4249_RS05920at 1211.387 kb on + strand, within A4249_RS05920at 1211.387 kb on + strand, within A4249_RS05920at 1211.388 kb on - strand, within A4249_RS05920at 1211.388 kb on - strand, within A4249_RS05920at 1211.388 kb on - strand, within A4249_RS05920at 1211.388 kb on - strand, within A4249_RS05920at 1211.450 kb on + strand, within A4249_RS05920at 1211.450 kb on + strand, within A4249_RS05920at 1211.451 kb on - strand, within A4249_RS05920at 1211.451 kb on - strand, within A4249_RS05920at 1211.451 kb on - strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.526 kb on - strand, within A4249_RS05920at 1211.823 kb on - strandat 1211.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,209,912 + +0.2
1,209,912 + -0.5
1,209,912 + +0.1
1,209,913 - -0.4
1,209,913 - -0.9
1,209,913 - +0.2
1,209,913 - -1.7
1,209,913 - +0.9
1,210,037 + A4249_RS05910 0.29 -1.8
1,210,037 + A4249_RS05910 0.29 -0.1
1,210,037 + A4249_RS05910 0.29 +1.1
1,210,037 + A4249_RS05910 0.29 -0.3
1,210,037 + A4249_RS05910 0.29 -0.7
1,210,037 + A4249_RS05910 0.29 +0.7
1,210,038 - A4249_RS05910 0.29 +0.4
1,210,038 - A4249_RS05910 0.29 -0.6
1,210,038 - A4249_RS05910 0.29 -0.9
1,210,038 - A4249_RS05910 0.29 -0.1
1,210,038 - A4249_RS05910 0.29 -1.4
1,210,038 - A4249_RS05910 0.29 -0.4
1,210,038 - A4249_RS05910 0.29 -0.4
1,210,038 - A4249_RS05910 0.29 +0.3
1,210,038 - A4249_RS05910 0.29 +0.6
1,210,150 + A4249_RS05910 0.58 -0.3
1,210,150 + A4249_RS05910 0.58 -0.6
1,210,150 + A4249_RS05910 0.58 -0.3
1,210,151 - A4249_RS05910 0.59 +0.2
1,210,151 - A4249_RS05910 0.59 -0.7
1,210,179 + A4249_RS05910 0.66 -0.3
1,210,179 + A4249_RS05910 0.66 -1.1
1,210,179 + A4249_RS05910 0.66 +1.6
1,210,180 - A4249_RS05910 0.66 -0.3
1,210,229 + A4249_RS05910 0.79 -0.6
1,210,229 + A4249_RS05910 0.79 -0.1
1,210,230 - A4249_RS05910 0.80 +1.2
1,210,415 + A4249_RS05915 0.22 -0.0
1,210,415 + A4249_RS05915 0.22 +0.4
1,210,415 + A4249_RS05915 0.22 -0.9
1,210,416 - A4249_RS05915 0.22 -1.5
1,210,416 - A4249_RS05915 0.22 -1.3
1,210,416 - A4249_RS05915 0.22 -1.8
1,210,416 - A4249_RS05915 0.22 -0.1
1,210,481 + A4249_RS05915 0.35 -0.0
1,210,481 + A4249_RS05915 0.35 +0.5
1,210,481 + A4249_RS05915 0.35 +1.2
1,210,481 + A4249_RS05915 0.35 -0.7
1,210,481 + A4249_RS05915 0.35 +1.1
1,210,481 + A4249_RS05915 0.35 +0.9
1,210,481 + A4249_RS05915 0.35 -0.2
1,210,481 + A4249_RS05915 0.35 +0.6
1,210,481 + A4249_RS05915 0.35 +0.0
1,210,482 - A4249_RS05915 0.36 -0.1
1,210,482 - A4249_RS05915 0.36 +0.5
1,210,482 - A4249_RS05915 0.36 +0.6
1,210,482 - A4249_RS05915 0.36 +0.1
1,210,482 - A4249_RS05915 0.36 -0.8
1,210,482 - A4249_RS05915 0.36 -0.5
1,210,482 - A4249_RS05915 0.36 -0.3
1,210,598 + A4249_RS05915 0.59 +0.5
1,210,599 - A4249_RS05915 0.59 -1.0
1,210,648 + A4249_RS05915 0.68 +0.4
1,210,649 - A4249_RS05915 0.69 +1.4
1,210,700 + A4249_RS05915 0.79 -0.1
1,210,701 - A4249_RS05915 0.79 -0.2
1,210,701 - A4249_RS05915 0.79 +0.0
1,210,815 + -0.2
1,210,816 - -0.6
1,210,816 - +0.5
1,210,816 - +0.4
1,210,816 - +0.3
1,211,084 + A4249_RS05920 0.25 -1.1
1,211,084 + A4249_RS05920 0.25 -1.4
1,211,084 + A4249_RS05920 0.25 -0.3
1,211,085 - A4249_RS05920 0.25 +0.3
1,211,085 - A4249_RS05920 0.25 -1.2
1,211,085 - A4249_RS05920 0.25 -0.6
1,211,085 - A4249_RS05920 0.25 -0.7
1,211,180 + A4249_RS05920 0.35 +0.0
1,211,180 + A4249_RS05920 0.35 -0.4
1,211,180 + A4249_RS05920 0.35 +0.5
1,211,180 + A4249_RS05920 0.35 -0.6
1,211,181 - A4249_RS05920 0.35 +0.1
1,211,200 - A4249_RS05920 0.37 -2.5
1,211,224 + A4249_RS05920 0.40 +0.0
1,211,224 + A4249_RS05920 0.40 +0.6
1,211,224 + A4249_RS05920 0.40 -0.5
1,211,224 + A4249_RS05920 0.40 -0.4
1,211,224 + A4249_RS05920 0.40 -0.6
1,211,224 + A4249_RS05920 0.40 -0.4
1,211,224 + A4249_RS05920 0.40 -0.2
1,211,224 + A4249_RS05920 0.40 -0.6
1,211,224 + A4249_RS05920 0.40 +0.1
1,211,225 - A4249_RS05920 0.40 -0.6
1,211,225 - A4249_RS05920 0.40 -0.2
1,211,225 - A4249_RS05920 0.40 -0.2
1,211,225 - A4249_RS05920 0.40 +0.5
1,211,225 - A4249_RS05920 0.40 +0.2
1,211,225 - A4249_RS05920 0.40 +0.3
1,211,225 - A4249_RS05920 0.40 -0.2
1,211,225 - A4249_RS05920 0.40 -0.4
1,211,225 - A4249_RS05920 0.40 -1.5
1,211,225 - A4249_RS05920 0.40 -0.3
1,211,225 - A4249_RS05920 0.40 -0.1
1,211,225 - A4249_RS05920 0.40 -0.4
1,211,225 - A4249_RS05920 0.40 -0.2
1,211,225 - A4249_RS05920 0.40 +0.4
1,211,225 - A4249_RS05920 0.40 -0.1
1,211,225 - A4249_RS05920 0.40 -0.4
1,211,225 - A4249_RS05920 0.40 -0.1
1,211,225 - A4249_RS05920 0.40 +0.4
1,211,225 - A4249_RS05920 0.40 -0.4
1,211,273 + A4249_RS05920 0.45 +0.9
1,211,273 + A4249_RS05920 0.45 +0.2
1,211,282 + A4249_RS05920 0.46 -0.8
1,211,282 + A4249_RS05920 0.46 +0.2
1,211,357 + A4249_RS05920 0.54 -0.5
1,211,387 + A4249_RS05920 0.57 -0.5
1,211,387 + A4249_RS05920 0.57 +0.1
1,211,388 - A4249_RS05920 0.57 -0.8
1,211,388 - A4249_RS05920 0.57 -0.4
1,211,388 - A4249_RS05920 0.57 +0.4
1,211,388 - A4249_RS05920 0.57 -0.7
1,211,450 + A4249_RS05920 0.64 -0.5
1,211,450 + A4249_RS05920 0.64 -0.8
1,211,451 - A4249_RS05920 0.64 +0.0
1,211,451 - A4249_RS05920 0.64 -0.4
1,211,451 - A4249_RS05920 0.64 -0.3
1,211,525 + A4249_RS05920 0.71 -0.0
1,211,525 + A4249_RS05920 0.71 -0.1
1,211,525 + A4249_RS05920 0.71 -1.2
1,211,525 + A4249_RS05920 0.71 +0.4
1,211,526 - A4249_RS05920 0.72 -0.1
1,211,823 - -1.1
1,211,823 - -0.5

Or see this region's nucleotide sequence