Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04410

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04400 and A4249_RS04405 overlap by 34 nucleotidesA4249_RS04405 and A4249_RS04410 overlap by 2 nucleotidesA4249_RS04410 and A4249_RS04415 are separated by 36 nucleotides A4249_RS04400: A4249_RS04400 - type 2 isopentenyl-diphosphate Delta-isomerase, at 911,131 to 912,174 _RS04400 A4249_RS04405: A4249_RS04405 - sterol desaturase family protein, at 912,141 to 912,626 _RS04405 A4249_RS04410: A4249_RS04410 - sterol desaturase family protein, at 912,625 to 913,434 _RS04410 A4249_RS04415: A4249_RS04415 - sigma-54 dependent transcriptional regulator, at 913,471 to 914,802 _RS04415 Position (kb) 912 913 914Strain fitness (log2 ratio) -2 -1 0 1 2at 911.906 kb on + strand, within A4249_RS04400at 911.906 kb on + strand, within A4249_RS04400at 911.907 kb on - strand, within A4249_RS04400at 912.358 kb on + strand, within A4249_RS04405at 912.358 kb on + strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.370 kb on + strand, within A4249_RS04405at 912.370 kb on + strand, within A4249_RS04405at 912.370 kb on + strand, within A4249_RS04405at 912.370 kb on + strand, within A4249_RS04405at 912.371 kb on - strand, within A4249_RS04405at 912.371 kb on - strand, within A4249_RS04405at 912.371 kb on - strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.548 kb on - strand, within A4249_RS04405at 912.548 kb on - strand, within A4249_RS04405at 912.548 kb on - strand, within A4249_RS04405at 912.636 kb on + strandat 912.637 kb on - strandat 912.637 kb on - strandat 912.637 kb on - strandat 912.645 kb on + strandat 912.645 kb on + strandat 912.646 kb on - strandat 912.646 kb on - strandat 912.757 kb on + strand, within A4249_RS04410at 912.758 kb on - strand, within A4249_RS04410at 912.892 kb on + strand, within A4249_RS04410at 912.892 kb on + strand, within A4249_RS04410at 912.892 kb on + strand, within A4249_RS04410at 912.893 kb on - strand, within A4249_RS04410at 912.893 kb on - strand, within A4249_RS04410at 912.893 kb on - strand, within A4249_RS04410at 912.893 kb on - strand, within A4249_RS04410at 912.949 kb on + strand, within A4249_RS04410at 912.949 kb on + strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.958 kb on - strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.004 kb on - strand, within A4249_RS04410at 913.004 kb on - strand, within A4249_RS04410at 913.004 kb on - strand, within A4249_RS04410at 913.010 kb on + strand, within A4249_RS04410at 913.010 kb on + strand, within A4249_RS04410at 913.011 kb on - strand, within A4249_RS04410at 913.011 kb on - strand, within A4249_RS04410at 913.011 kb on - strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.030 kb on + strand, within A4249_RS04410at 913.031 kb on - strand, within A4249_RS04410at 913.031 kb on - strand, within A4249_RS04410at 913.031 kb on - strand, within A4249_RS04410at 913.054 kb on + strand, within A4249_RS04410at 913.055 kb on - strand, within A4249_RS04410at 913.191 kb on + strand, within A4249_RS04410at 913.191 kb on + strand, within A4249_RS04410at 913.191 kb on + strand, within A4249_RS04410at 913.191 kb on + strand, within A4249_RS04410at 913.191 kb on + strand, within A4249_RS04410at 913.192 kb on - strand, within A4249_RS04410at 913.192 kb on - strand, within A4249_RS04410at 913.192 kb on - strand, within A4249_RS04410at 913.192 kb on - strand, within A4249_RS04410at 913.192 kb on - strand, within A4249_RS04410at 913.205 kb on + strand, within A4249_RS04410at 913.206 kb on - strand, within A4249_RS04410at 913.360 kb on + strandat 913.360 kb on + strandat 913.360 kb on + strandat 913.360 kb on + strandat 913.360 kb on + strandat 913.360 kb on + strandat 913.360 kb on + strandat 913.360 kb on + strandat 913.361 kb on - strandat 913.361 kb on - strandat 913.361 kb on - strandat 913.361 kb on - strandat 913.361 kb on - strandat 913.361 kb on - strandat 913.361 kb on - strandat 913.361 kb on - strandat 913.369 kb on + strandat 913.369 kb on + strandat 913.369 kb on + strandat 913.369 kb on + strandat 913.370 kb on - strandat 913.370 kb on - strandat 913.492 kb on + strandat 913.492 kb on + strandat 913.492 kb on + strandat 913.518 kb on - strandat 913.561 kb on + strandat 913.561 kb on + strandat 913.561 kb on + strandat 913.562 kb on - strandat 913.562 kb on - strandat 913.562 kb on - strandat 913.562 kb on - strandat 913.582 kb on + strandat 913.582 kb on + strandat 913.582 kb on + strandat 913.582 kb on + strandat 913.750 kb on + strand, within A4249_RS04415at 913.751 kb on - strand, within A4249_RS04415at 913.751 kb on - strand, within A4249_RS04415at 913.762 kb on + strand, within A4249_RS04415at 913.762 kb on + strand, within A4249_RS04415at 913.763 kb on - strand, within A4249_RS04415at 913.764 kb on + strand, within A4249_RS04415at 913.764 kb on + strand, within A4249_RS04415at 913.764 kb on + strand, within A4249_RS04415at 913.764 kb on + strand, within A4249_RS04415at 913.764 kb on + strand, within A4249_RS04415at 913.764 kb on + strand, within A4249_RS04415at 913.765 kb on - strand, within A4249_RS04415at 913.765 kb on - strand, within A4249_RS04415at 913.765 kb on - strand, within A4249_RS04415at 913.765 kb on - strand, within A4249_RS04415at 913.819 kb on + strand, within A4249_RS04415at 913.819 kb on + strand, within A4249_RS04415at 913.819 kb on + strand, within A4249_RS04415at 913.819 kb on + strand, within A4249_RS04415at 913.820 kb on - strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.830 kb on + strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.831 kb on - strand, within A4249_RS04415at 913.886 kb on + strand, within A4249_RS04415at 913.886 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.889 kb on + strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.890 kb on - strand, within A4249_RS04415at 913.967 kb on - strand, within A4249_RS04415at 913.967 kb on - strand, within A4249_RS04415at 913.967 kb on - strand, within A4249_RS04415

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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911,906 + A4249_RS04400 0.74 +0.5
911,906 + A4249_RS04400 0.74 -0.6
911,907 - A4249_RS04400 0.74 +1.2
912,358 + A4249_RS04405 0.45 +0.4
912,358 + A4249_RS04405 0.45 -0.8
912,359 - A4249_RS04405 0.45 +0.5
912,359 - A4249_RS04405 0.45 -1.2
912,359 - A4249_RS04405 0.45 -0.4
912,359 - A4249_RS04405 0.45 -0.6
912,359 - A4249_RS04405 0.45 +0.4
912,370 + A4249_RS04405 0.47 -0.4
912,370 + A4249_RS04405 0.47 -0.1
912,370 + A4249_RS04405 0.47 -0.0
912,370 + A4249_RS04405 0.47 +1.5
912,371 - A4249_RS04405 0.47 +1.1
912,371 - A4249_RS04405 0.47 +0.2
912,371 - A4249_RS04405 0.47 -0.5
912,547 + A4249_RS04405 0.84 -0.9
912,547 + A4249_RS04405 0.84 -0.2
912,547 + A4249_RS04405 0.84 +0.6
912,547 + A4249_RS04405 0.84 +0.2
912,547 + A4249_RS04405 0.84 -0.1
912,547 + A4249_RS04405 0.84 -0.5
912,547 + A4249_RS04405 0.84 -0.6
912,547 + A4249_RS04405 0.84 -1.0
912,547 + A4249_RS04405 0.84 +0.1
912,547 + A4249_RS04405 0.84 -0.1
912,547 + A4249_RS04405 0.84 -0.8
912,547 + A4249_RS04405 0.84 +1.8
912,548 - A4249_RS04405 0.84 -0.4
912,548 - A4249_RS04405 0.84 -1.3
912,548 - A4249_RS04405 0.84 -1.8
912,636 + -0.0
912,637 - -0.1
912,637 - +0.4
912,637 - -0.5
912,645 + -0.1
912,645 + +0.3
912,646 - -0.3
912,646 - +1.1
912,757 + A4249_RS04410 0.16 +0.2
912,758 - A4249_RS04410 0.16 +0.3
912,892 + A4249_RS04410 0.33 +0.4
912,892 + A4249_RS04410 0.33 -0.4
912,892 + A4249_RS04410 0.33 -1.5
912,893 - A4249_RS04410 0.33 -0.9
912,893 - A4249_RS04410 0.33 +0.3
912,893 - A4249_RS04410 0.33 +0.2
912,893 - A4249_RS04410 0.33 -1.6
912,949 + A4249_RS04410 0.40 -0.3
912,949 + A4249_RS04410 0.40 +0.3
912,950 - A4249_RS04410 0.40 +0.2
912,950 - A4249_RS04410 0.40 -0.3
912,950 - A4249_RS04410 0.40 -1.5
912,950 - A4249_RS04410 0.40 -1.3
912,950 - A4249_RS04410 0.40 +0.3
912,950 - A4249_RS04410 0.40 -0.6
912,958 - A4249_RS04410 0.41 -0.2
913,003 + A4249_RS04410 0.47 -0.2
913,003 + A4249_RS04410 0.47 +0.5
913,003 + A4249_RS04410 0.47 -0.1
913,003 + A4249_RS04410 0.47 -0.4
913,003 + A4249_RS04410 0.47 +0.6
913,003 + A4249_RS04410 0.47 +0.1
913,003 + A4249_RS04410 0.47 -0.1
913,003 + A4249_RS04410 0.47 -0.0
913,004 - A4249_RS04410 0.47 +0.6
913,004 - A4249_RS04410 0.47 -0.7
913,004 - A4249_RS04410 0.47 -0.2
913,010 + A4249_RS04410 0.48 -1.4
913,010 + A4249_RS04410 0.48 +0.5
913,011 - A4249_RS04410 0.48 +1.5
913,011 - A4249_RS04410 0.48 -0.1
913,011 - A4249_RS04410 0.48 +0.3
913,027 + A4249_RS04410 0.50 -0.1
913,027 + A4249_RS04410 0.50 -0.2
913,027 + A4249_RS04410 0.50 -1.2
913,027 + A4249_RS04410 0.50 -0.0
913,027 + A4249_RS04410 0.50 +0.5
913,027 + A4249_RS04410 0.50 +0.4
913,027 + A4249_RS04410 0.50 -0.1
913,027 + A4249_RS04410 0.50 +0.7
913,027 + A4249_RS04410 0.50 +0.3
913,027 + A4249_RS04410 0.50 +0.4
913,027 + A4249_RS04410 0.50 -0.5
913,027 + A4249_RS04410 0.50 -0.2
913,028 - A4249_RS04410 0.50 +0.8
913,028 - A4249_RS04410 0.50 -0.8
913,028 - A4249_RS04410 0.50 +1.3
913,028 - A4249_RS04410 0.50 -0.1
913,028 - A4249_RS04410 0.50 +0.1
913,028 - A4249_RS04410 0.50 +0.2
913,028 - A4249_RS04410 0.50 -0.2
913,028 - A4249_RS04410 0.50 +0.0
913,028 - A4249_RS04410 0.50 -0.1
913,028 - A4249_RS04410 0.50 +0.3
913,028 - A4249_RS04410 0.50 -0.4
913,028 - A4249_RS04410 0.50 -0.8
913,030 + A4249_RS04410 0.50 +0.9
913,031 - A4249_RS04410 0.50 +1.5
913,031 - A4249_RS04410 0.50 +0.8
913,031 - A4249_RS04410 0.50 -0.3
913,054 + A4249_RS04410 0.53 -0.1
913,055 - A4249_RS04410 0.53 -0.1
913,191 + A4249_RS04410 0.70 +0.5
913,191 + A4249_RS04410 0.70 -0.4
913,191 + A4249_RS04410 0.70 +0.0
913,191 + A4249_RS04410 0.70 -0.4
913,191 + A4249_RS04410 0.70 -0.3
913,192 - A4249_RS04410 0.70 -0.1
913,192 - A4249_RS04410 0.70 +1.3
913,192 - A4249_RS04410 0.70 +0.1
913,192 - A4249_RS04410 0.70 +1.2
913,192 - A4249_RS04410 0.70 +0.1
913,205 + A4249_RS04410 0.72 +0.2
913,206 - A4249_RS04410 0.72 +1.5
913,360 + -1.0
913,360 + +0.4
913,360 + -0.6
913,360 + +0.4
913,360 + +1.2
913,360 + -1.2
913,360 + -0.9
913,360 + +0.3
913,361 - +0.5
913,361 - -0.4
913,361 - +1.0
913,361 - +0.3
913,361 - -0.3
913,361 - +0.3
913,361 - -0.2
913,361 - -0.5
913,369 + -0.3
913,369 + -0.2
913,369 + +1.0
913,369 + +0.9
913,370 - -0.0
913,370 - -0.2
913,492 + -0.1
913,492 + +0.8
913,492 + -0.4
913,518 - -0.3
913,561 + +0.9
913,561 + +1.1
913,561 + -0.4
913,562 - +0.4
913,562 - -1.8
913,562 - -0.7
913,562 - +2.2
913,582 + -0.4
913,582 + -0.1
913,582 + +0.4
913,582 + +1.2
913,750 + A4249_RS04415 0.21 -0.8
913,751 - A4249_RS04415 0.21 -0.4
913,751 - A4249_RS04415 0.21 -0.4
913,762 + A4249_RS04415 0.22 -0.5
913,762 + A4249_RS04415 0.22 +0.5
913,763 - A4249_RS04415 0.22 +0.4
913,764 + A4249_RS04415 0.22 +0.3
913,764 + A4249_RS04415 0.22 +0.5
913,764 + A4249_RS04415 0.22 +0.8
913,764 + A4249_RS04415 0.22 -1.1
913,764 + A4249_RS04415 0.22 -0.4
913,764 + A4249_RS04415 0.22 +0.8
913,765 - A4249_RS04415 0.22 -1.1
913,765 - A4249_RS04415 0.22 +0.6
913,765 - A4249_RS04415 0.22 +0.8
913,765 - A4249_RS04415 0.22 -1.0
913,819 + A4249_RS04415 0.26 -0.4
913,819 + A4249_RS04415 0.26 +0.1
913,819 + A4249_RS04415 0.26 -0.4
913,819 + A4249_RS04415 0.26 -0.7
913,820 - A4249_RS04415 0.26 -0.9
913,830 + A4249_RS04415 0.27 -0.1
913,830 + A4249_RS04415 0.27 -0.5
913,830 + A4249_RS04415 0.27 -0.1
913,830 + A4249_RS04415 0.27 +0.1
913,830 + A4249_RS04415 0.27 -0.3
913,830 + A4249_RS04415 0.27 -0.6
913,831 - A4249_RS04415 0.27 +1.3
913,831 - A4249_RS04415 0.27 +0.2
913,831 - A4249_RS04415 0.27 +0.5
913,831 - A4249_RS04415 0.27 +1.3
913,831 - A4249_RS04415 0.27 +0.7
913,886 + A4249_RS04415 0.31 +0.7
913,886 + A4249_RS04415 0.31 -0.8
913,889 + A4249_RS04415 0.31 -1.3
913,889 + A4249_RS04415 0.31 +0.8
913,889 + A4249_RS04415 0.31 -0.1
913,889 + A4249_RS04415 0.31 -0.7
913,889 + A4249_RS04415 0.31 -0.6
913,890 - A4249_RS04415 0.31 +0.3
913,890 - A4249_RS04415 0.31 -0.1
913,890 - A4249_RS04415 0.31 -0.2
913,890 - A4249_RS04415 0.31 -0.8
913,890 - A4249_RS04415 0.31 -0.1
913,967 - A4249_RS04415 0.37 +1.8
913,967 - A4249_RS04415 0.37 -0.2
913,967 - A4249_RS04415 0.37 -0.1

Or see this region's nucleotide sequence