Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04145

Experiment: Guanosine 0.35306 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS04135 and A4249_RS04140 overlap by 16 nucleotidesA4249_RS04140 and A4249_RS04145 overlap by 4 nucleotidesA4249_RS04145 and A4249_RS04150 are separated by 134 nucleotides A4249_RS04135: A4249_RS04135 - ABC transporter ATP-binding protein/permease, at 859,924 to 861,774 _RS04135 A4249_RS04140: A4249_RS04140 - chemotaxis protein CheE, at 861,759 to 862,238 _RS04140 A4249_RS04145: A4249_RS04145 - response regulator, at 862,235 to 862,786 _RS04145 A4249_RS04150: A4249_RS04150 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 862,921 to 863,868 _RS04150 Position (kb) 862 863Strain fitness (log2 ratio) -2 -1 0 1 2at 861.715 kb on + strandat 861.715 kb on + strandat 861.715 kb on + strandat 861.715 kb on + strandat 861.716 kb on - strandat 861.716 kb on - strandat 861.798 kb on + strandat 861.798 kb on + strandat 861.799 kb on - strandat 861.799 kb on - strandat 861.799 kb on - strandat 861.799 kb on - strandat 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.949 kb on - strand, within A4249_RS04140at 861.949 kb on - strand, within A4249_RS04140at 861.949 kb on - strand, within A4249_RS04140at 862.024 kb on + strand, within A4249_RS04140at 862.025 kb on - strand, within A4249_RS04140at 862.089 kb on - strand, within A4249_RS04140at 862.089 kb on - strand, within A4249_RS04140at 862.238 kb on + strandat 862.238 kb on + strandat 862.238 kb on + strandat 862.239 kb on - strandat 862.302 kb on + strand, within A4249_RS04145at 862.302 kb on + strand, within A4249_RS04145at 862.302 kb on + strand, within A4249_RS04145at 862.302 kb on + strand, within A4249_RS04145at 862.303 kb on - strand, within A4249_RS04145at 862.338 kb on + strand, within A4249_RS04145at 862.338 kb on + strand, within A4249_RS04145at 862.339 kb on - strand, within A4249_RS04145at 862.339 kb on - strand, within A4249_RS04145at 862.339 kb on - strand, within A4249_RS04145at 862.633 kb on + strand, within A4249_RS04145at 862.633 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
remove
861,715 + -0.2
861,715 + +1.0
861,715 + +1.0
861,715 + -0.6
861,716 - -1.7
861,716 - +0.1
861,798 + -0.1
861,798 + -0.8
861,799 - -0.1
861,799 - -0.3
861,799 - +0.0
861,799 - -0.6
861,948 + A4249_RS04140 0.39 +1.0
861,948 + A4249_RS04140 0.39 -0.2
861,948 + A4249_RS04140 0.39 -0.9
861,948 + A4249_RS04140 0.39 +0.6
861,948 + A4249_RS04140 0.39 -0.3
861,949 - A4249_RS04140 0.40 -0.5
861,949 - A4249_RS04140 0.40 +1.1
861,949 - A4249_RS04140 0.40 -0.8
862,024 + A4249_RS04140 0.55 -0.1
862,025 - A4249_RS04140 0.55 -0.2
862,089 - A4249_RS04140 0.69 -1.1
862,089 - A4249_RS04140 0.69 -0.2
862,238 + +0.3
862,238 + -1.9
862,238 + -0.5
862,239 - -1.0
862,302 + A4249_RS04145 0.12 +0.1
862,302 + A4249_RS04145 0.12 -0.2
862,302 + A4249_RS04145 0.12 -0.1
862,302 + A4249_RS04145 0.12 -0.5
862,303 - A4249_RS04145 0.12 -0.7
862,338 + A4249_RS04145 0.19 +0.5
862,338 + A4249_RS04145 0.19 +1.3
862,339 - A4249_RS04145 0.19 +0.7
862,339 - A4249_RS04145 0.19 +0.0
862,339 - A4249_RS04145 0.19 -0.3
862,633 + A4249_RS04145 0.72 -0.3
862,633 + A4249_RS04145 0.72 +0.7
862,650 + A4249_RS04145 0.75 -0.0
862,650 + A4249_RS04145 0.75 +2.0
862,650 + A4249_RS04145 0.75 -0.0
862,650 + A4249_RS04145 0.75 -0.8
862,650 + A4249_RS04145 0.75 +1.8
862,650 + A4249_RS04145 0.75 +0.5
862,650 + A4249_RS04145 0.75 +0.5
862,650 + A4249_RS04145 0.75 +1.0
862,650 + A4249_RS04145 0.75 -0.1
862,650 + A4249_RS04145 0.75 -0.0
862,651 - A4249_RS04145 0.75 -0.2
862,651 - A4249_RS04145 0.75 +1.2
862,651 - A4249_RS04145 0.75 +0.3
862,651 - A4249_RS04145 0.75 +0.3
862,651 - A4249_RS04145 0.75 -2.1
862,651 - A4249_RS04145 0.75 -0.5

Or see this region's nucleotide sequence