Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02605

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02595 and A4249_RS02600 are separated by 19 nucleotidesA4249_RS02600 and A4249_RS02605 are separated by 66 nucleotidesA4249_RS02605 and A4249_RS02610 are separated by 83 nucleotides A4249_RS02595: A4249_RS02595 - isocitrate lyase, at 556,465 to 557,745 _RS02595 A4249_RS02600: A4249_RS02600 - hypothetical protein, at 557,765 to 557,974 _RS02600 A4249_RS02605: A4249_RS02605 - hypothetical protein, at 558,041 to 559,171 _RS02605 A4249_RS02610: A4249_RS02610 - ribose-phosphate pyrophosphokinase, at 559,255 to 560,190 _RS02610 Position (kb) 558 559 560Strain fitness (log2 ratio) -2 -1 0 1 2at 557.241 kb on - strand, within A4249_RS02595at 557.269 kb on + strand, within A4249_RS02595at 557.269 kb on + strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.277 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.382 kb on + strand, within A4249_RS02595at 557.382 kb on + strand, within A4249_RS02595at 557.382 kb on + strand, within A4249_RS02595at 557.382 kb on + strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.467 kb on + strand, within A4249_RS02595at 557.467 kb on + strand, within A4249_RS02595at 557.523 kb on - strand, within A4249_RS02595at 557.563 kb on + strand, within A4249_RS02595at 557.564 kb on - strand, within A4249_RS02595at 557.608 kb on + strand, within A4249_RS02595at 557.609 kb on - strand, within A4249_RS02595at 557.648 kb on - strandat 557.743 kb on + strandat 557.743 kb on + strandat 557.885 kb on + strand, within A4249_RS02600at 557.885 kb on + strand, within A4249_RS02600at 557.885 kb on + strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.966 kb on + strandat 557.967 kb on - strandat 557.972 kb on + strandat 557.973 kb on - strandat 557.973 kb on - strandat 558.127 kb on + strandat 558.127 kb on + strandat 558.127 kb on + strandat 558.127 kb on + strandat 558.127 kb on + strandat 558.128 kb on - strandat 558.128 kb on - strandat 558.128 kb on - strandat 558.128 kb on - strandat 558.258 kb on + strand, within A4249_RS02605at 558.258 kb on + strand, within A4249_RS02605at 558.259 kb on - strand, within A4249_RS02605at 558.259 kb on - strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.353 kb on - strand, within A4249_RS02605at 558.432 kb on + strand, within A4249_RS02605at 558.432 kb on + strand, within A4249_RS02605at 558.432 kb on + strand, within A4249_RS02605at 558.432 kb on + strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.630 kb on + strand, within A4249_RS02605at 558.630 kb on + strand, within A4249_RS02605at 558.631 kb on - strand, within A4249_RS02605at 558.631 kb on - strand, within A4249_RS02605at 558.631 kb on - strand, within A4249_RS02605at 558.631 kb on - strand, within A4249_RS02605at 558.741 kb on + strand, within A4249_RS02605at 558.741 kb on + strand, within A4249_RS02605at 558.742 kb on - strand, within A4249_RS02605at 558.801 kb on + strand, within A4249_RS02605at 558.801 kb on + strand, within A4249_RS02605at 558.801 kb on + strand, within A4249_RS02605at 558.801 kb on + strand, within A4249_RS02605at 558.801 kb on + strand, within A4249_RS02605at 558.801 kb on + strand, within A4249_RS02605at 558.801 kb on + strand, within A4249_RS02605at 558.802 kb on - strand, within A4249_RS02605at 558.802 kb on - strand, within A4249_RS02605at 558.802 kb on - strand, within A4249_RS02605at 558.809 kb on + strand, within A4249_RS02605at 558.809 kb on + strand, within A4249_RS02605at 558.810 kb on - strand, within A4249_RS02605at 558.810 kb on - strand, within A4249_RS02605at 558.855 kb on + strand, within A4249_RS02605at 558.856 kb on - strand, within A4249_RS02605at 558.891 kb on + strand, within A4249_RS02605at 558.891 kb on + strand, within A4249_RS02605at 558.892 kb on - strand, within A4249_RS02605at 558.892 kb on - strand, within A4249_RS02605at 558.984 kb on + strand, within A4249_RS02605at 558.984 kb on + strand, within A4249_RS02605at 558.984 kb on + strand, within A4249_RS02605at 558.984 kb on + strand, within A4249_RS02605at 558.985 kb on - strand, within A4249_RS02605at 558.985 kb on - strand, within A4249_RS02605at 558.985 kb on - strand, within A4249_RS02605at 558.985 kb on - strand, within A4249_RS02605at 559.157 kb on + strandat 559.157 kb on + strandat 559.191 kb on + strandat 559.191 kb on + strandat 559.212 kb on + strandat 559.212 kb on + strandat 559.212 kb on + strandat 559.213 kb on - strandat 559.213 kb on - strandat 559.213 kb on - strandat 559.225 kb on + strandat 559.225 kb on + strandat 559.225 kb on + strandat 559.225 kb on + strandat 559.225 kb on + strandat 559.225 kb on + strandat 559.225 kb on + strandat 559.226 kb on - strandat 559.226 kb on - strandat 559.226 kb on - strandat 559.227 kb on + strandat 559.228 kb on - strandat 559.228 kb on - strandat 559.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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557,241 - A4249_RS02595 0.61 +0.5
557,269 + A4249_RS02595 0.63 -2.6
557,269 + A4249_RS02595 0.63 -0.4
557,270 - A4249_RS02595 0.63 +1.3
557,270 - A4249_RS02595 0.63 -1.6
557,270 - A4249_RS02595 0.63 -0.7
557,270 - A4249_RS02595 0.63 -0.3
557,277 + A4249_RS02595 0.63 -0.1
557,380 + A4249_RS02595 0.71 -0.4
557,380 + A4249_RS02595 0.71 -0.2
557,380 + A4249_RS02595 0.71 -0.2
557,380 + A4249_RS02595 0.71 +0.3
557,380 + A4249_RS02595 0.71 +0.3
557,380 + A4249_RS02595 0.71 -0.1
557,380 + A4249_RS02595 0.71 -0.4
557,380 + A4249_RS02595 0.71 +0.6
557,381 - A4249_RS02595 0.72 -1.4
557,381 - A4249_RS02595 0.72 +1.8
557,381 - A4249_RS02595 0.72 -1.3
557,381 - A4249_RS02595 0.72 +0.2
557,381 - A4249_RS02595 0.72 +0.5
557,381 - A4249_RS02595 0.72 +0.8
557,381 - A4249_RS02595 0.72 -0.3
557,381 - A4249_RS02595 0.72 -0.7
557,381 - A4249_RS02595 0.72 +0.0
557,382 + A4249_RS02595 0.72 +0.2
557,382 + A4249_RS02595 0.72 +0.7
557,382 + A4249_RS02595 0.72 +0.9
557,382 + A4249_RS02595 0.72 +0.7
557,383 - A4249_RS02595 0.72 -0.0
557,383 - A4249_RS02595 0.72 -0.3
557,383 - A4249_RS02595 0.72 -0.1
557,383 - A4249_RS02595 0.72 +0.2
557,383 - A4249_RS02595 0.72 -0.4
557,383 - A4249_RS02595 0.72 +0.8
557,467 + A4249_RS02595 0.78 -0.0
557,467 + A4249_RS02595 0.78 -0.1
557,523 - A4249_RS02595 0.83 -0.2
557,563 + A4249_RS02595 0.86 -0.6
557,564 - A4249_RS02595 0.86 -0.5
557,608 + A4249_RS02595 0.89 -0.3
557,609 - A4249_RS02595 0.89 -0.5
557,648 - +0.6
557,743 + -0.0
557,743 + -0.8
557,885 + A4249_RS02600 0.57 -0.2
557,885 + A4249_RS02600 0.57 +0.6
557,885 + A4249_RS02600 0.57 -0.9
557,886 - A4249_RS02600 0.58 +0.2
557,886 - A4249_RS02600 0.58 +0.4
557,886 - A4249_RS02600 0.58 -0.7
557,886 - A4249_RS02600 0.58 -0.5
557,886 - A4249_RS02600 0.58 -0.0
557,886 - A4249_RS02600 0.58 +0.1
557,886 - A4249_RS02600 0.58 -0.5
557,886 - A4249_RS02600 0.58 +0.7
557,966 + -0.3
557,967 - -1.1
557,972 + +0.5
557,973 - +1.0
557,973 - -0.2
558,127 + -0.7
558,127 + -0.3
558,127 + -0.2
558,127 + -0.6
558,127 + -1.0
558,128 - -0.7
558,128 - -0.1
558,128 - -0.1
558,128 - -1.2
558,258 + A4249_RS02605 0.19 -0.3
558,258 + A4249_RS02605 0.19 -0.7
558,259 - A4249_RS02605 0.19 -0.1
558,259 - A4249_RS02605 0.19 -0.3
558,307 + A4249_RS02605 0.24 +0.0
558,307 + A4249_RS02605 0.24 -0.6
558,307 + A4249_RS02605 0.24 -0.3
558,307 + A4249_RS02605 0.24 -0.1
558,307 + A4249_RS02605 0.24 -0.3
558,307 + A4249_RS02605 0.24 -0.2
558,307 + A4249_RS02605 0.24 -0.5
558,307 + A4249_RS02605 0.24 -0.5
558,307 + A4249_RS02605 0.24 -0.1
558,307 + A4249_RS02605 0.24 +0.3
558,307 + A4249_RS02605 0.24 -0.0
558,307 + A4249_RS02605 0.24 -0.8
558,307 + A4249_RS02605 0.24 -0.4
558,307 + A4249_RS02605 0.24 +0.1
558,307 + A4249_RS02605 0.24 -0.6
558,308 - A4249_RS02605 0.24 -0.4
558,308 - A4249_RS02605 0.24 -0.1
558,308 - A4249_RS02605 0.24 +0.0
558,308 - A4249_RS02605 0.24 -0.5
558,308 - A4249_RS02605 0.24 -0.6
558,308 - A4249_RS02605 0.24 -0.4
558,308 - A4249_RS02605 0.24 -0.1
558,308 - A4249_RS02605 0.24 -0.2
558,308 - A4249_RS02605 0.24 -0.9
558,308 - A4249_RS02605 0.24 -0.5
558,308 - A4249_RS02605 0.24 -0.6
558,308 - A4249_RS02605 0.24 -0.5
558,308 - A4249_RS02605 0.24 -0.5
558,308 - A4249_RS02605 0.24 -0.2
558,308 - A4249_RS02605 0.24 -0.1
558,308 - A4249_RS02605 0.24 -0.3
558,308 - A4249_RS02605 0.24 -0.6
558,308 - A4249_RS02605 0.24 -0.8
558,308 - A4249_RS02605 0.24 -0.3
558,353 - A4249_RS02605 0.28 -0.3
558,432 + A4249_RS02605 0.35 +0.0
558,432 + A4249_RS02605 0.35 -0.3
558,432 + A4249_RS02605 0.35 -0.4
558,432 + A4249_RS02605 0.35 -0.1
558,433 - A4249_RS02605 0.35 -0.5
558,433 - A4249_RS02605 0.35 +0.5
558,433 - A4249_RS02605 0.35 -0.4
558,433 - A4249_RS02605 0.35 -0.1
558,433 - A4249_RS02605 0.35 -0.1
558,630 + A4249_RS02605 0.52 -0.4
558,630 + A4249_RS02605 0.52 -0.7
558,631 - A4249_RS02605 0.52 +0.5
558,631 - A4249_RS02605 0.52 +0.1
558,631 - A4249_RS02605 0.52 -0.5
558,631 - A4249_RS02605 0.52 +0.1
558,741 + A4249_RS02605 0.62 +0.1
558,741 + A4249_RS02605 0.62 +0.6
558,742 - A4249_RS02605 0.62 -0.6
558,801 + A4249_RS02605 0.67 -0.2
558,801 + A4249_RS02605 0.67 -1.6
558,801 + A4249_RS02605 0.67 +0.6
558,801 + A4249_RS02605 0.67 -0.2
558,801 + A4249_RS02605 0.67 +0.3
558,801 + A4249_RS02605 0.67 -0.3
558,801 + A4249_RS02605 0.67 +0.3
558,802 - A4249_RS02605 0.67 -0.4
558,802 - A4249_RS02605 0.67 +0.2
558,802 - A4249_RS02605 0.67 -0.2
558,809 + A4249_RS02605 0.68 +0.3
558,809 + A4249_RS02605 0.68 +0.3
558,810 - A4249_RS02605 0.68 +0.4
558,810 - A4249_RS02605 0.68 -0.1
558,855 + A4249_RS02605 0.72 -0.7
558,856 - A4249_RS02605 0.72 -1.5
558,891 + A4249_RS02605 0.75 -0.3
558,891 + A4249_RS02605 0.75 -0.7
558,892 - A4249_RS02605 0.75 -0.4
558,892 - A4249_RS02605 0.75 +0.1
558,984 + A4249_RS02605 0.83 -0.4
558,984 + A4249_RS02605 0.83 -0.5
558,984 + A4249_RS02605 0.83 -0.3
558,984 + A4249_RS02605 0.83 -0.4
558,985 - A4249_RS02605 0.83 -0.1
558,985 - A4249_RS02605 0.83 +0.1
558,985 - A4249_RS02605 0.83 -0.2
558,985 - A4249_RS02605 0.83 -0.4
559,157 + -0.5
559,157 + -0.6
559,191 + -0.1
559,191 + +1.1
559,212 + +0.4
559,212 + +0.8
559,212 + +0.1
559,213 - +0.9
559,213 - -0.2
559,213 - +1.2
559,225 + +0.0
559,225 + -0.5
559,225 + -0.7
559,225 + -0.5
559,225 + -0.6
559,225 + -0.1
559,225 + -0.0
559,226 - -0.7
559,226 - +0.8
559,226 - -0.1
559,227 + -0.3
559,228 - -0.2
559,228 - +0.1
559,228 - -2.2

Or see this region's nucleotide sequence