Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01620

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01610 and A4249_RS01615 are separated by 46 nucleotidesA4249_RS01615 and A4249_RS01620 overlap by 4 nucleotidesA4249_RS01620 and A4249_RS01625 are separated by 171 nucleotides A4249_RS01610: A4249_RS01610 - TetR/AcrR family transcriptional regulator, at 305,423 to 305,998 _RS01610 A4249_RS01615: A4249_RS01615 - GNAT family N-acetyltransferase, at 306,045 to 306,554 _RS01615 A4249_RS01620: A4249_RS01620 - S46 family peptidase, at 306,551 to 308,629 _RS01620 A4249_RS01625: A4249_RS01625 - S46 family peptidase, at 308,801 to 310,894 _RS01625 Position (kb) 306 307 308 309Strain fitness (log2 ratio) -2 -1 0 1 2at 305.844 kb on + strand, within A4249_RS01610at 305.844 kb on + strand, within A4249_RS01610at 306.046 kb on + strandat 306.046 kb on + strandat 306.047 kb on - strandat 306.145 kb on + strand, within A4249_RS01615at 306.146 kb on - strand, within A4249_RS01615at 306.146 kb on - strand, within A4249_RS01615at 306.298 kb on + strand, within A4249_RS01615at 306.298 kb on + strand, within A4249_RS01615at 306.298 kb on + strand, within A4249_RS01615at 306.482 kb on - strand, within A4249_RS01615at 306.594 kb on + strandat 306.594 kb on + strandat 306.595 kb on - strandat 306.595 kb on - strandat 306.595 kb on - strandat 306.595 kb on - strandat 306.595 kb on - strandat 306.595 kb on - strandat 306.595 kb on - strandat 306.663 kb on + strandat 306.663 kb on + strandat 306.664 kb on - strandat 306.669 kb on + strandat 306.669 kb on + strandat 306.670 kb on - strandat 306.670 kb on - strandat 306.670 kb on - strandat 306.670 kb on - strandat 306.670 kb on - strandat 306.942 kb on + strand, within A4249_RS01620at 306.942 kb on + strand, within A4249_RS01620at 306.942 kb on + strand, within A4249_RS01620at 306.942 kb on + strand, within A4249_RS01620at 306.943 kb on - strand, within A4249_RS01620at 306.943 kb on - strand, within A4249_RS01620at 306.943 kb on - strand, within A4249_RS01620at 306.943 kb on - strand, within A4249_RS01620at 306.943 kb on - strand, within A4249_RS01620at 306.990 kb on + strand, within A4249_RS01620at 306.990 kb on + strand, within A4249_RS01620at 307.051 kb on + strand, within A4249_RS01620at 307.051 kb on + strand, within A4249_RS01620at 307.051 kb on + strand, within A4249_RS01620at 307.051 kb on + strand, within A4249_RS01620at 307.051 kb on + strand, within A4249_RS01620at 307.052 kb on - strand, within A4249_RS01620at 307.052 kb on - strand, within A4249_RS01620at 307.104 kb on + strand, within A4249_RS01620at 307.104 kb on + strand, within A4249_RS01620at 307.105 kb on - strand, within A4249_RS01620at 307.105 kb on - strand, within A4249_RS01620at 307.105 kb on - strand, within A4249_RS01620at 307.105 kb on - strand, within A4249_RS01620at 307.105 kb on - strand, within A4249_RS01620at 307.254 kb on + strand, within A4249_RS01620at 307.254 kb on + strand, within A4249_RS01620at 307.530 kb on + strand, within A4249_RS01620at 307.530 kb on + strand, within A4249_RS01620at 307.530 kb on + strand, within A4249_RS01620at 307.531 kb on - strand, within A4249_RS01620at 307.531 kb on - strand, within A4249_RS01620at 307.531 kb on - strand, within A4249_RS01620at 307.605 kb on + strand, within A4249_RS01620at 307.605 kb on + strand, within A4249_RS01620at 307.605 kb on + strand, within A4249_RS01620at 307.605 kb on + strand, within A4249_RS01620at 307.606 kb on - strand, within A4249_RS01620at 307.606 kb on - strand, within A4249_RS01620at 307.676 kb on - strand, within A4249_RS01620at 307.676 kb on - strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.695 kb on + strand, within A4249_RS01620at 307.696 kb on - strand, within A4249_RS01620at 307.696 kb on - strand, within A4249_RS01620at 307.762 kb on - strand, within A4249_RS01620at 307.965 kb on + strand, within A4249_RS01620at 307.965 kb on + strand, within A4249_RS01620at 307.965 kb on + strand, within A4249_RS01620at 307.966 kb on - strand, within A4249_RS01620at 307.966 kb on - strand, within A4249_RS01620at 307.966 kb on - strand, within A4249_RS01620at 308.079 kb on + strand, within A4249_RS01620at 308.079 kb on + strand, within A4249_RS01620at 308.080 kb on - strand, within A4249_RS01620at 308.094 kb on + strand, within A4249_RS01620at 308.094 kb on + strand, within A4249_RS01620at 308.309 kb on + strand, within A4249_RS01620at 308.329 kb on + strand, within A4249_RS01620at 308.329 kb on + strand, within A4249_RS01620at 308.329 kb on + strand, within A4249_RS01620at 308.346 kb on + strand, within A4249_RS01620at 308.346 kb on + strand, within A4249_RS01620at 308.347 kb on - strand, within A4249_RS01620at 308.347 kb on - strand, within A4249_RS01620at 308.347 kb on - strand, within A4249_RS01620at 308.497 kb on + strandat 308.498 kb on - strandat 308.498 kb on - strandat 308.544 kb on + strandat 308.544 kb on + strandat 308.544 kb on + strandat 308.545 kb on - strandat 308.545 kb on - strandat 308.844 kb on + strandat 308.844 kb on + strandat 308.844 kb on + strandat 308.844 kb on + strandat 308.844 kb on + strandat 308.844 kb on + strandat 308.844 kb on + strandat 308.845 kb on - strandat 308.845 kb on - strandat 308.845 kb on - strandat 308.845 kb on - strandat 308.845 kb on - strandat 308.845 kb on - strandat 309.039 kb on + strand, within A4249_RS01625at 309.039 kb on + strand, within A4249_RS01625at 309.039 kb on + strand, within A4249_RS01625at 309.039 kb on + strand, within A4249_RS01625at 309.039 kb on + strand, within A4249_RS01625at 309.040 kb on - strand, within A4249_RS01625at 309.040 kb on - strand, within A4249_RS01625at 309.040 kb on - strand, within A4249_RS01625at 309.040 kb on - strand, within A4249_RS01625at 309.040 kb on - strand, within A4249_RS01625at 309.123 kb on + strand, within A4249_RS01625at 309.123 kb on + strand, within A4249_RS01625at 309.123 kb on + strand, within A4249_RS01625at 309.123 kb on + strand, within A4249_RS01625at 309.123 kb on + strand, within A4249_RS01625at 309.123 kb on + strand, within A4249_RS01625at 309.124 kb on - strand, within A4249_RS01625at 309.124 kb on - strand, within A4249_RS01625at 309.168 kb on + strand, within A4249_RS01625at 309.168 kb on + strand, within A4249_RS01625at 309.168 kb on + strand, within A4249_RS01625at 309.169 kb on - strand, within A4249_RS01625at 309.169 kb on - strand, within A4249_RS01625at 309.192 kb on + strand, within A4249_RS01625at 309.193 kb on - strand, within A4249_RS01625at 309.225 kb on + strand, within A4249_RS01625at 309.226 kb on - strand, within A4249_RS01625at 309.240 kb on + strand, within A4249_RS01625at 309.240 kb on + strand, within A4249_RS01625at 309.525 kb on + strand, within A4249_RS01625at 309.525 kb on + strand, within A4249_RS01625at 309.526 kb on - strand, within A4249_RS01625at 309.526 kb on - strand, within A4249_RS01625at 309.526 kb on - strand, within A4249_RS01625at 309.526 kb on - strand, within A4249_RS01625at 309.526 kb on - strand, within A4249_RS01625at 309.526 kb on - strand, within A4249_RS01625at 309.558 kb on + strand, within A4249_RS01625at 309.558 kb on + strand, within A4249_RS01625at 309.558 kb on + strand, within A4249_RS01625at 309.558 kb on + strand, within A4249_RS01625at 309.558 kb on + strand, within A4249_RS01625at 309.558 kb on + strand, within A4249_RS01625at 309.558 kb on + strand, within A4249_RS01625at 309.558 kb on + strand, within A4249_RS01625at 309.559 kb on - strand, within A4249_RS01625at 309.559 kb on - strand, within A4249_RS01625at 309.559 kb on - strand, within A4249_RS01625at 309.559 kb on - strand, within A4249_RS01625at 309.560 kb on + strand, within A4249_RS01625

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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305,844 + A4249_RS01610 0.73 -1.3
305,844 + A4249_RS01610 0.73 +0.6
306,046 + -0.2
306,046 + -0.0
306,047 - +0.4
306,145 + A4249_RS01615 0.20 +1.0
306,146 - A4249_RS01615 0.20 -1.4
306,146 - A4249_RS01615 0.20 +0.6
306,298 + A4249_RS01615 0.50 -0.4
306,298 + A4249_RS01615 0.50 +0.2
306,298 + A4249_RS01615 0.50 +0.6
306,482 - A4249_RS01615 0.86 +0.7
306,594 + +0.6
306,594 + -0.4
306,595 - +1.4
306,595 - -1.2
306,595 - -0.7
306,595 - -0.2
306,595 - +0.6
306,595 - -1.1
306,595 - -0.5
306,663 + +0.3
306,663 + -1.0
306,664 - +1.1
306,669 + +0.0
306,669 + -0.0
306,670 - -0.8
306,670 - +0.2
306,670 - -0.8
306,670 - +0.9
306,670 - +0.4
306,942 + A4249_RS01620 0.19 +0.6
306,942 + A4249_RS01620 0.19 -0.5
306,942 + A4249_RS01620 0.19 +0.4
306,942 + A4249_RS01620 0.19 +0.2
306,943 - A4249_RS01620 0.19 -0.2
306,943 - A4249_RS01620 0.19 -0.5
306,943 - A4249_RS01620 0.19 -0.2
306,943 - A4249_RS01620 0.19 +0.6
306,943 - A4249_RS01620 0.19 +0.9
306,990 + A4249_RS01620 0.21 -0.2
306,990 + A4249_RS01620 0.21 +1.0
307,051 + A4249_RS01620 0.24 -0.1
307,051 + A4249_RS01620 0.24 -0.2
307,051 + A4249_RS01620 0.24 +0.5
307,051 + A4249_RS01620 0.24 +0.9
307,051 + A4249_RS01620 0.24 -0.5
307,052 - A4249_RS01620 0.24 -0.2
307,052 - A4249_RS01620 0.24 +0.1
307,104 + A4249_RS01620 0.27 -0.4
307,104 + A4249_RS01620 0.27 +0.7
307,105 - A4249_RS01620 0.27 -0.5
307,105 - A4249_RS01620 0.27 -0.6
307,105 - A4249_RS01620 0.27 -0.4
307,105 - A4249_RS01620 0.27 -0.2
307,105 - A4249_RS01620 0.27 +0.3
307,254 + A4249_RS01620 0.34 +1.1
307,254 + A4249_RS01620 0.34 -0.6
307,530 + A4249_RS01620 0.47 +1.0
307,530 + A4249_RS01620 0.47 +0.0
307,530 + A4249_RS01620 0.47 -0.1
307,531 - A4249_RS01620 0.47 +0.0
307,531 - A4249_RS01620 0.47 -0.7
307,531 - A4249_RS01620 0.47 +0.6
307,605 + A4249_RS01620 0.51 +0.6
307,605 + A4249_RS01620 0.51 -1.0
307,605 + A4249_RS01620 0.51 -0.2
307,605 + A4249_RS01620 0.51 -0.3
307,606 - A4249_RS01620 0.51 +1.1
307,606 - A4249_RS01620 0.51 -0.2
307,676 - A4249_RS01620 0.54 -0.6
307,676 - A4249_RS01620 0.54 -0.2
307,695 + A4249_RS01620 0.55 -0.2
307,695 + A4249_RS01620 0.55 -0.5
307,695 + A4249_RS01620 0.55 -0.5
307,695 + A4249_RS01620 0.55 +0.2
307,695 + A4249_RS01620 0.55 +0.4
307,695 + A4249_RS01620 0.55 +0.3
307,695 + A4249_RS01620 0.55 +1.5
307,695 + A4249_RS01620 0.55 -0.6
307,695 + A4249_RS01620 0.55 +0.4
307,695 + A4249_RS01620 0.55 +0.0
307,695 + A4249_RS01620 0.55 +0.9
307,695 + A4249_RS01620 0.55 -1.6
307,696 - A4249_RS01620 0.55 +0.5
307,696 - A4249_RS01620 0.55 +0.0
307,762 - A4249_RS01620 0.58 -0.3
307,965 + A4249_RS01620 0.68 -0.9
307,965 + A4249_RS01620 0.68 +0.9
307,965 + A4249_RS01620 0.68 -0.2
307,966 - A4249_RS01620 0.68 +1.4
307,966 - A4249_RS01620 0.68 +0.7
307,966 - A4249_RS01620 0.68 -0.6
308,079 + A4249_RS01620 0.73 -0.6
308,079 + A4249_RS01620 0.73 -0.0
308,080 - A4249_RS01620 0.74 -1.4
308,094 + A4249_RS01620 0.74 -0.2
308,094 + A4249_RS01620 0.74 -0.1
308,309 + A4249_RS01620 0.85 -0.2
308,329 + A4249_RS01620 0.86 -0.4
308,329 + A4249_RS01620 0.86 +0.5
308,329 + A4249_RS01620 0.86 +0.7
308,346 + A4249_RS01620 0.86 -0.3
308,346 + A4249_RS01620 0.86 -1.3
308,347 - A4249_RS01620 0.86 -1.4
308,347 - A4249_RS01620 0.86 -0.1
308,347 - A4249_RS01620 0.86 -0.0
308,497 + -0.1
308,498 - -0.3
308,498 - -0.1
308,544 + +0.6
308,544 + -0.0
308,544 + +1.1
308,545 - -0.0
308,545 - -1.1
308,844 + +0.3
308,844 + +0.1
308,844 + +0.4
308,844 + -0.8
308,844 + +0.6
308,844 + -0.6
308,844 + +0.4
308,845 - +0.1
308,845 - +0.1
308,845 - +0.6
308,845 - +1.1
308,845 - -0.6
308,845 - -0.4
309,039 + A4249_RS01625 0.11 +1.4
309,039 + A4249_RS01625 0.11 +0.0
309,039 + A4249_RS01625 0.11 +0.4
309,039 + A4249_RS01625 0.11 +0.1
309,039 + A4249_RS01625 0.11 +0.0
309,040 - A4249_RS01625 0.11 -0.4
309,040 - A4249_RS01625 0.11 -0.8
309,040 - A4249_RS01625 0.11 -0.4
309,040 - A4249_RS01625 0.11 -0.2
309,040 - A4249_RS01625 0.11 +0.6
309,123 + A4249_RS01625 0.15 +1.0
309,123 + A4249_RS01625 0.15 +0.8
309,123 + A4249_RS01625 0.15 +1.1
309,123 + A4249_RS01625 0.15 -0.9
309,123 + A4249_RS01625 0.15 +0.8
309,123 + A4249_RS01625 0.15 +1.2
309,124 - A4249_RS01625 0.15 -0.4
309,124 - A4249_RS01625 0.15 -1.6
309,168 + A4249_RS01625 0.18 -2.0
309,168 + A4249_RS01625 0.18 +1.7
309,168 + A4249_RS01625 0.18 -0.4
309,169 - A4249_RS01625 0.18 +0.5
309,169 - A4249_RS01625 0.18 +0.0
309,192 + A4249_RS01625 0.19 -0.5
309,193 - A4249_RS01625 0.19 -1.2
309,225 + A4249_RS01625 0.20 -0.3
309,226 - A4249_RS01625 0.20 -0.8
309,240 + A4249_RS01625 0.21 +1.0
309,240 + A4249_RS01625 0.21 +0.2
309,525 + A4249_RS01625 0.35 +0.2
309,525 + A4249_RS01625 0.35 -0.1
309,526 - A4249_RS01625 0.35 -0.2
309,526 - A4249_RS01625 0.35 +0.1
309,526 - A4249_RS01625 0.35 +0.4
309,526 - A4249_RS01625 0.35 -0.9
309,526 - A4249_RS01625 0.35 -0.2
309,526 - A4249_RS01625 0.35 +0.5
309,558 + A4249_RS01625 0.36 +1.6
309,558 + A4249_RS01625 0.36 +1.8
309,558 + A4249_RS01625 0.36 -0.2
309,558 + A4249_RS01625 0.36 +0.1
309,558 + A4249_RS01625 0.36 +1.4
309,558 + A4249_RS01625 0.36 -0.2
309,558 + A4249_RS01625 0.36 +0.6
309,558 + A4249_RS01625 0.36 -0.5
309,559 - A4249_RS01625 0.36 +1.2
309,559 - A4249_RS01625 0.36 +0.0
309,559 - A4249_RS01625 0.36 -1.1
309,559 - A4249_RS01625 0.36 +0.5
309,560 + A4249_RS01625 0.36 -0.3

Or see this region's nucleotide sequence