Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01425

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01415 and A4249_RS01420 are separated by 29 nucleotidesA4249_RS01420 and A4249_RS01425 overlap by 4 nucleotidesA4249_RS01425 and A4249_RS01430 overlap by 4 nucleotidesA4249_RS01430 and A4249_RS01435 are separated by 52 nucleotidesA4249_RS01435 and A4249_RS01440 are separated by 5 nucleotides A4249_RS01415: A4249_RS01415 - phage Gp37/Gp68 family protein, at 263,917 to 265,023 _RS01415 A4249_RS01420: A4249_RS01420 - hypothetical protein, at 265,053 to 265,709 _RS01420 A4249_RS01425: A4249_RS01425 - hypothetical protein, at 265,706 to 266,212 _RS01425 A4249_RS01430: A4249_RS01430 - DUF2786 domain-containing protein, at 266,209 to 266,901 _RS01430 A4249_RS01435: A4249_RS01435 - hypothetical protein, at 266,954 to 267,148 _RS01435 A4249_RS01440: A4249_RS01440 - tyrosine-type recombinase/integrase, at 267,154 to 268,200 _RS01440 Position (kb) 265 266 267Strain fitness (log2 ratio) -2 -1 0 1 2at 265.004 kb on - strandat 265.052 kb on + strandat 265.053 kb on - strandat 265.053 kb on - strandat 265.209 kb on + strand, within A4249_RS01420at 265.255 kb on - strand, within A4249_RS01420at 265.276 kb on + strand, within A4249_RS01420at 265.276 kb on + strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.308 kb on + strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.315 kb on - strand, within A4249_RS01420at 265.365 kb on + strand, within A4249_RS01420at 265.365 kb on + strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.374 kb on + strand, within A4249_RS01420at 265.374 kb on + strand, within A4249_RS01420at 265.375 kb on - strand, within A4249_RS01420at 265.375 kb on - strand, within A4249_RS01420at 265.608 kb on + strand, within A4249_RS01420at 265.609 kb on - strand, within A4249_RS01420at 265.609 kb on - strand, within A4249_RS01420at 265.676 kb on + strandat 265.677 kb on - strandat 265.677 kb on - strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.904 kb on + strand, within A4249_RS01425at 265.905 kb on - strand, within A4249_RS01425at 266.226 kb on + strandat 266.226 kb on + strandat 266.227 kb on - strandat 266.227 kb on - strandat 266.227 kb on - strandat 266.332 kb on + strand, within A4249_RS01430at 266.332 kb on + strand, within A4249_RS01430at 266.333 kb on - strand, within A4249_RS01430at 266.333 kb on - strand, within A4249_RS01430at 266.333 kb on - strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 267.175 kb on + strandat 267.175 kb on + strandat 267.175 kb on + strandat 267.175 kb on + strandat 267.175 kb on + strandat 267.175 kb on + strandat 267.176 kb on - strandat 267.176 kb on - strandat 267.176 kb on - strandat 267.176 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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265,004 - -0.5
265,052 + -0.0
265,053 - -1.8
265,053 - -1.9
265,209 + A4249_RS01420 0.24 +0.7
265,255 - A4249_RS01420 0.31 +0.4
265,276 + A4249_RS01420 0.34 -1.1
265,276 + A4249_RS01420 0.34 +0.2
265,277 - A4249_RS01420 0.34 +0.2
265,277 - A4249_RS01420 0.34 +1.1
265,277 - A4249_RS01420 0.34 -0.6
265,277 - A4249_RS01420 0.34 +0.2
265,277 - A4249_RS01420 0.34 +0.6
265,308 + A4249_RS01420 0.39 -0.3
265,309 - A4249_RS01420 0.39 -0.4
265,309 - A4249_RS01420 0.39 -1.1
265,309 - A4249_RS01420 0.39 -0.8
265,309 - A4249_RS01420 0.39 -0.9
265,309 - A4249_RS01420 0.39 -0.5
265,315 - A4249_RS01420 0.40 -0.2
265,365 + A4249_RS01420 0.47 -1.1
265,365 + A4249_RS01420 0.47 +0.3
265,366 - A4249_RS01420 0.48 +0.4
265,366 - A4249_RS01420 0.48 -0.5
265,366 - A4249_RS01420 0.48 -0.1
265,366 - A4249_RS01420 0.48 -0.8
265,374 + A4249_RS01420 0.49 -0.9
265,374 + A4249_RS01420 0.49 +2.1
265,375 - A4249_RS01420 0.49 -0.8
265,375 - A4249_RS01420 0.49 +1.0
265,608 + A4249_RS01420 0.84 -1.1
265,609 - A4249_RS01420 0.85 +0.2
265,609 - A4249_RS01420 0.85 +0.6
265,676 + +0.2
265,677 - -0.5
265,677 - +1.1
265,730 + +0.2
265,730 + +0.9
265,730 + -0.6
265,730 + -0.9
265,730 + +0.5
265,731 - -0.4
265,731 - -0.7
265,731 - -0.4
265,731 - -0.1
265,731 - -0.1
265,731 - +1.4
265,814 + A4249_RS01425 0.21 -0.1
265,814 + A4249_RS01425 0.21 +0.5
265,814 + A4249_RS01425 0.21 -0.7
265,814 + A4249_RS01425 0.21 -0.0
265,814 + A4249_RS01425 0.21 -0.5
265,815 - A4249_RS01425 0.21 -0.7
265,815 - A4249_RS01425 0.21 -1.1
265,815 - A4249_RS01425 0.21 -0.5
265,815 - A4249_RS01425 0.21 -0.2
265,883 + A4249_RS01425 0.35 -0.6
265,883 + A4249_RS01425 0.35 +0.7
265,883 + A4249_RS01425 0.35 -0.3
265,883 + A4249_RS01425 0.35 +0.3
265,883 + A4249_RS01425 0.35 -0.8
265,884 - A4249_RS01425 0.35 +0.1
265,884 - A4249_RS01425 0.35 +0.1
265,884 - A4249_RS01425 0.35 -0.5
265,884 - A4249_RS01425 0.35 +0.9
265,884 - A4249_RS01425 0.35 +0.3
265,904 + A4249_RS01425 0.39 +0.7
265,905 - A4249_RS01425 0.39 -2.1
266,226 + +0.7
266,226 + -0.3
266,227 - -0.2
266,227 - -0.7
266,227 - +0.6
266,332 + A4249_RS01430 0.18 +0.3
266,332 + A4249_RS01430 0.18 +1.0
266,333 - A4249_RS01430 0.18 -0.5
266,333 - A4249_RS01430 0.18 +0.1
266,333 - A4249_RS01430 0.18 +0.1
266,337 + A4249_RS01430 0.18 +1.1
266,337 + A4249_RS01430 0.18 +0.6
266,337 + A4249_RS01430 0.18 +0.2
266,337 + A4249_RS01430 0.18 -1.5
266,337 + A4249_RS01430 0.18 -0.3
266,337 + A4249_RS01430 0.18 +0.6
266,337 + A4249_RS01430 0.18 -1.0
266,337 + A4249_RS01430 0.18 -1.4
266,337 + A4249_RS01430 0.18 -0.7
266,337 + A4249_RS01430 0.18 -0.3
266,338 - A4249_RS01430 0.19 -0.2
266,338 - A4249_RS01430 0.19 -0.8
266,338 - A4249_RS01430 0.19 -1.1
266,338 - A4249_RS01430 0.19 -0.8
266,338 - A4249_RS01430 0.19 -0.1
266,338 - A4249_RS01430 0.19 -0.9
266,338 - A4249_RS01430 0.19 -0.4
266,338 - A4249_RS01430 0.19 +0.7
266,338 - A4249_RS01430 0.19 -0.3
266,338 - A4249_RS01430 0.19 -2.3
266,540 - A4249_RS01430 0.48 -0.7
266,540 - A4249_RS01430 0.48 -0.2
266,540 - A4249_RS01430 0.48 +1.8
266,540 - A4249_RS01430 0.48 -0.9
266,540 - A4249_RS01430 0.48 -1.0
266,540 - A4249_RS01430 0.48 +0.9
267,175 + -0.1
267,175 + -2.7
267,175 + +0.1
267,175 + -0.4
267,175 + +0.1
267,175 + -0.1
267,176 - +0.7
267,176 - -0.2
267,176 - -0.4
267,176 - -0.1

Or see this region's nucleotide sequence