Experiment: Guanosine 0.35306 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01085 and A4249_RS01090 are separated by 164 nucleotides A4249_RS01090 and A4249_RS01095 overlap by 11 nucleotides A4249_RS01095 and A4249_RS01100 are separated by 311 nucleotides A4249_RS01100 and A4249_RS01105 are separated by 11 nucleotides
A4249_RS01085: A4249_RS01085 - DUF2282 domain-containing protein, at 209,376 to 209,666
_RS01085
A4249_RS01090: A4249_RS01090 - sigma-70 family RNA polymerase sigma factor, at 209,831 to 210,391
_RS01090
A4249_RS01095: A4249_RS01095 - DUF1109 domain-containing protein, at 210,381 to 211,022
_RS01095
A4249_RS01100: A4249_RS01100 - MBL fold metallo-hydrolase, at 211,334 to 212,005
_RS01100
A4249_RS01105: A4249_RS01105 - YncE family protein, at 212,017 to 213,456
_RS01105
Position (kb) 210
211
212 Strain fitness (log2 ratio) -2
-1
0
1
2 at 209.470 kb on + strand, within A4249_RS01085 at 209.471 kb on - strand, within A4249_RS01085 at 209.549 kb on - strand, within A4249_RS01085 at 209.742 kb on + strand at 209.759 kb on + strand at 209.759 kb on + strand at 209.759 kb on + strand at 209.760 kb on - strand at 209.760 kb on - strand at 209.760 kb on - strand at 209.760 kb on - strand at 209.792 kb on + strand at 209.792 kb on + strand at 209.792 kb on + strand at 209.793 kb on - strand at 209.793 kb on - strand at 209.793 kb on - strand at 209.793 kb on - strand at 209.815 kb on + strand at 209.816 kb on - strand at 210.293 kb on + strand, within A4249_RS01090 at 210.294 kb on - strand, within A4249_RS01090 at 211.039 kb on - strand at 211.039 kb on - strand at 211.095 kb on + strand at 211.095 kb on + strand at 211.095 kb on + strand at 211.095 kb on + strand at 211.095 kb on + strand at 211.095 kb on + strand at 211.095 kb on + strand at 211.096 kb on - strand at 211.096 kb on - strand at 211.096 kb on - strand at 211.096 kb on - strand at 211.096 kb on - strand at 211.096 kb on - strand at 211.096 kb on - strand at 211.096 kb on - strand at 211.096 kb on - strand at 211.096 kb on - strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.150 kb on - strand at 211.150 kb on - strand at 211.150 kb on - strand at 211.150 kb on - strand at 211.150 kb on - strand at 211.150 kb on - strand at 211.161 kb on + strand at 211.161 kb on + strand at 211.161 kb on + strand at 211.161 kb on + strand at 211.181 kb on - strand at 211.181 kb on - strand at 211.265 kb on + strand at 211.265 kb on + strand at 211.265 kb on + strand at 211.265 kb on + strand at 211.266 kb on - strand at 211.266 kb on - strand at 211.266 kb on - strand at 211.289 kb on + strand at 211.289 kb on + strand at 211.410 kb on + strand, within A4249_RS01100 at 211.410 kb on + strand, within A4249_RS01100 at 211.410 kb on + strand, within A4249_RS01100 at 211.411 kb on - strand, within A4249_RS01100 at 211.411 kb on - strand, within A4249_RS01100 at 211.412 kb on - strand, within A4249_RS01100 at 211.420 kb on - strand, within A4249_RS01100 at 211.420 kb on - strand, within A4249_RS01100 at 211.420 kb on - strand, within A4249_RS01100 at 211.428 kb on + strand, within A4249_RS01100 at 211.429 kb on - strand, within A4249_RS01100 at 211.429 kb on - strand, within A4249_RS01100 at 211.446 kb on + strand, within A4249_RS01100 at 211.447 kb on - strand, within A4249_RS01100 at 211.534 kb on - strand, within A4249_RS01100 at 211.981 kb on + strand at 211.981 kb on + strand at 211.981 kb on + strand at 211.981 kb on + strand at 211.981 kb on + strand at 211.981 kb on + strand at 211.982 kb on - strand at 211.982 kb on - strand at 211.982 kb on - strand at 211.982 kb on - strand at 212.018 kb on + strand at 212.018 kb on + strand at 212.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C) remove 209,470 + A4249_RS01085 0.32 +0.9 209,471 - A4249_RS01085 0.33 +1.3 209,549 - A4249_RS01085 0.59 +1.2 209,742 + -1.2 209,759 + +0.7 209,759 + -0.0 209,759 + +0.8 209,760 - -1.2 209,760 - -0.5 209,760 - -0.6 209,760 - +0.4 209,792 + -0.4 209,792 + -0.0 209,792 + +1.2 209,793 - +0.3 209,793 - -1.8 209,793 - -0.8 209,793 - -0.0 209,815 + +0.4 209,816 - -0.6 210,293 + A4249_RS01090 0.82 +0.2 210,294 - A4249_RS01090 0.83 +0.4 211,039 - -0.1 211,039 - +0.4 211,095 + -0.2 211,095 + +0.7 211,095 + -0.8 211,095 + -0.7 211,095 + +1.2 211,095 + -1.4 211,095 + +0.1 211,096 - -0.3 211,096 - -0.2 211,096 - -0.7 211,096 - -0.3 211,096 - +1.1 211,096 - -1.0 211,096 - +0.1 211,096 - +0.2 211,096 - +1.2 211,096 - +0.1 211,149 + +0.3 211,149 + +0.3 211,149 + -0.2 211,149 + -0.5 211,149 + -0.3 211,149 + +0.2 211,149 + -1.0 211,149 + +0.1 211,149 + +0.2 211,150 - +1.8 211,150 - +0.0 211,150 - -0.6 211,150 - +0.5 211,150 - -0.3 211,150 - +0.4 211,161 + +0.9 211,161 + -0.6 211,161 + -0.7 211,161 + -0.2 211,181 - +0.2 211,181 - -0.4 211,265 + +0.2 211,265 + +0.3 211,265 + +0.1 211,265 + +0.5 211,266 - +0.1 211,266 - -0.3 211,266 - -0.2 211,289 + -1.2 211,289 + -0.1 211,410 + A4249_RS01100 0.11 -0.9 211,410 + A4249_RS01100 0.11 +0.4 211,410 + A4249_RS01100 0.11 +0.9 211,411 - A4249_RS01100 0.11 -0.4 211,411 - A4249_RS01100 0.11 +0.7 211,412 - A4249_RS01100 0.12 -0.5 211,420 - A4249_RS01100 0.13 -0.5 211,420 - A4249_RS01100 0.13 -0.4 211,420 - A4249_RS01100 0.13 -0.1 211,428 + A4249_RS01100 0.14 -0.7 211,429 - A4249_RS01100 0.14 -0.4 211,429 - A4249_RS01100 0.14 -0.0 211,446 + A4249_RS01100 0.17 -0.4 211,447 - A4249_RS01100 0.17 -0.1 211,534 - A4249_RS01100 0.30 -0.4 211,981 + -0.2 211,981 + +0.4 211,981 + -0.5 211,981 + +0.1 211,981 + +0.6 211,981 + +0.4 211,982 - -1.1 211,982 - -0.7 211,982 - -0.2 211,982 - +1.3 212,018 + -0.8 212,018 + -1.1 212,019 - +0.1
Or see this region's nucleotide sequence