Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14000

Experiment: Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM
3,079,548	+		LRK53_RS13990	0.65	+0.3
3,079,548	+		LRK53_RS13990	0.65	-0.6
3,079,548	+		LRK53_RS13990	0.65	-1.4
3,079,548	+		LRK53_RS13990	0.65	-3.0
3,079,548	+		LRK53_RS13990	0.65	-0.7
3,079,548	+		LRK53_RS13990	0.65	-0.0
3,079,549	-		LRK53_RS13990	0.65	-0.8
3,079,549	-		LRK53_RS13990	0.65	+0.4
3,079,549	-		LRK53_RS13990	0.65	+1.2
3,079,549	-		LRK53_RS13990	0.65	-0.6
3,079,606	-		LRK53_RS13990	0.70	-1.2
3,079,734	+		LRK53_RS13990	0.79	+1.4
3,079,734	+		LRK53_RS13990	0.79	-1.1
3,079,734	+		LRK53_RS13990	0.79	-2.8
3,079,734	+		LRK53_RS13990	0.79	+2.0
3,079,734	+		LRK53_RS13990	0.79	-0.6
3,079,734	+		LRK53_RS13990	0.79	-0.9
3,079,734	+		LRK53_RS13990	0.79	-1.7
3,079,734	+		LRK53_RS13990	0.79	+0.6
3,079,735	-		LRK53_RS13990	0.79	-0.7
3,079,735	-		LRK53_RS13990	0.79	-0.6
3,079,735	-		LRK53_RS13990	0.79	-1.7
3,079,735	-		LRK53_RS13990	0.79	+1.0
3,079,735	-		LRK53_RS13990	0.79	-1.0
3,079,735	-		LRK53_RS13990	0.79	-1.0
3,079,735	-		LRK53_RS13990	0.79	-1.2
3,079,735	-		LRK53_RS13990	0.79	-0.2
3,079,911	+				+0.8
3,079,911	+				-0.6
3,079,911	+				+1.0
3,079,974	+				-1.7
3,079,974	+				+2.0
3,079,974	+				-0.4
3,079,974	+				+0.9
3,079,974	+				-1.7
3,079,975	-				+0.9
3,079,975	-				-0.9
3,079,975	-				-0.6
3,079,975	-				+0.3
3,079,975	-				-0.4
3,079,975	-				-1.7
3,079,975	-				-1.1
3,080,000	+				-0.9
3,080,000	+				-0.7
3,080,000	+				+0.0
3,080,001	-				+0.9
3,080,001	-				-0.3
3,080,014	+				-1.5
3,080,014	+				-1.2
3,080,089	+				-1.1
3,080,089	+				+0.4
3,080,089	+				-1.4
3,080,089	+				-0.4
3,080,090	-				-1.7
3,080,107	+				-0.8
3,080,107	+				-0.6
3,080,107	+				+0.0
3,080,108	-				-0.9
3,080,108	-				+0.0
3,080,108	-				+1.2
3,080,108	-				-1.2
3,080,108	-				-0.6
3,080,108	-				+1.6
3,080,108	-				-0.0
3,080,131	+		LRK53_RS13995	0.15	+0.3
3,080,131	+		LRK53_RS13995	0.15	+0.3
3,080,131	+		LRK53_RS13995	0.15	+0.3
3,080,131	+		LRK53_RS13995	0.15	+0.0
3,080,132	-		LRK53_RS13995	0.16	-2.6
3,080,132	-		LRK53_RS13995	0.16	+0.6
3,080,182	+		LRK53_RS13995	0.28	-1.9
3,080,182	+		LRK53_RS13995	0.28	-0.1
3,080,182	+		LRK53_RS13995	0.28	-1.7
3,080,183	-		LRK53_RS13995	0.28	-0.3
3,080,183	-		LRK53_RS13995	0.28	-0.1
3,080,183	-		LRK53_RS13995	0.28	-2.4
3,080,183	-		LRK53_RS13995	0.28	-0.9
3,080,183	-		LRK53_RS13995	0.28	-0.4
3,080,183	-		LRK53_RS13995	0.28	-0.5
3,080,183	-		LRK53_RS13995	0.28	-1.0
3,080,183	-		LRK53_RS13995	0.28	-0.9
3,080,206	+		LRK53_RS13995	0.34	+0.6
3,080,206	+		LRK53_RS13995	0.34	-0.8
3,080,206	+		LRK53_RS13995	0.34	+0.6
3,080,206	+		LRK53_RS13995	0.34	-1.8
3,080,206	+		LRK53_RS13995	0.34	+0.8
3,080,206	+		LRK53_RS13995	0.34	-0.3
3,080,206	+		LRK53_RS13995	0.34	-1.4
3,080,207	-		LRK53_RS13995	0.34	-0.8
3,080,207	-		LRK53_RS13995	0.34	-0.8
3,080,207	-		LRK53_RS13995	0.34	-1.2
3,080,207	-		LRK53_RS13995	0.34	+0.6
3,080,207	-		LRK53_RS13995	0.34	-0.5
3,080,224	+		LRK53_RS13995	0.38	-1.5
3,080,224	+		LRK53_RS13995	0.38	+1.3
3,080,224	+		LRK53_RS13995	0.38	-0.7
3,080,224	+		LRK53_RS13995	0.38	-0.6
3,080,224	+		LRK53_RS13995	0.38	-0.6
3,080,224	+		LRK53_RS13995	0.38	-1.1
3,080,225	-		LRK53_RS13995	0.38	-0.1
3,080,225	-		LRK53_RS13995	0.38	-0.6
3,080,225	-		LRK53_RS13995	0.38	+0.7
3,080,225	-		LRK53_RS13995	0.38	+1.2
3,080,225	-		LRK53_RS13995	0.38	+0.9
3,080,225	-		LRK53_RS13995	0.38	+0.0
3,080,225	-		LRK53_RS13995	0.38	-1.6
3,080,225	-		LRK53_RS13995	0.38	-0.2
3,080,225	-		LRK53_RS13995	0.38	+0.6
3,080,225	-		LRK53_RS13995	0.38	-0.6
3,080,225	-		LRK53_RS13995	0.38	+0.6
3,080,225	-		LRK53_RS13995	0.38	+1.4
3,080,225	-		LRK53_RS13995	0.38	-0.6
3,080,225	-		LRK53_RS13995	0.38	-0.9
3,080,227	+		LRK53_RS13995	0.39	-2.3
3,080,227	+		LRK53_RS13995	0.39	-0.7
3,080,227	+		LRK53_RS13995	0.39	+0.8
3,080,227	+		LRK53_RS13995	0.39	-1.1
3,080,227	+		LRK53_RS13995	0.39	-0.2
3,080,227	+		LRK53_RS13995	0.39	+1.3
3,080,227	+		LRK53_RS13995	0.39	-1.7
3,080,227	+		LRK53_RS13995	0.39	-1.2
3,080,227	+		LRK53_RS13995	0.39	-1.3
3,080,227	+		LRK53_RS13995	0.39	-1.3
3,080,227	+		LRK53_RS13995	0.39	-2.3
3,080,227	+		LRK53_RS13995	0.39	+0.3
3,080,227	+		LRK53_RS13995	0.39	-1.1
3,080,228	-		LRK53_RS13995	0.39	-2.7
3,080,228	-		LRK53_RS13995	0.39	-2.4
3,080,228	-		LRK53_RS13995	0.39	-0.2
3,080,228	-		LRK53_RS13995	0.39	-2.8
3,080,228	-		LRK53_RS13995	0.39	+0.4
3,080,228	-		LRK53_RS13995	0.39	-0.9
3,080,228	-		LRK53_RS13995	0.39	-0.0
3,080,228	-		LRK53_RS13995	0.39	-0.7
3,080,228	-		LRK53_RS13995	0.39	-1.3
3,080,332	+		LRK53_RS13995	0.64	-2.2
3,080,332	+		LRK53_RS13995	0.64	-1.2
3,080,332	+		LRK53_RS13995	0.64	-0.1
3,080,332	+		LRK53_RS13995	0.64	-0.5
3,080,333	-		LRK53_RS13995	0.64	+2.9
3,080,333	-		LRK53_RS13995	0.64	-0.3
3,080,333	-		LRK53_RS13995	0.64	-1.9
3,080,335	+		LRK53_RS13995	0.65	-1.1
3,080,335	+		LRK53_RS13995	0.65	-1.2
3,080,335	+		LRK53_RS13995	0.65	-0.9
3,080,335	+		LRK53_RS13995	0.65	-0.8
3,080,335	+		LRK53_RS13995	0.65	-0.2
3,080,336	-		LRK53_RS13995	0.65	+0.8
3,080,336	-		LRK53_RS13995	0.65	-1.3
3,080,336	-		LRK53_RS13995	0.65	-1.1
3,080,348	-		LRK53_RS13995	0.68	-0.9
3,080,356	+		LRK53_RS13995	0.70	+0.7
3,080,356	+		LRK53_RS13995	0.70	-0.6
3,080,356	+		LRK53_RS13995	0.70	-1.7
3,080,357	-		LRK53_RS13995	0.70	-0.3
3,080,357	-		LRK53_RS13995	0.70	-0.0
3,080,357	-		LRK53_RS13995	0.70	+1.2
3,080,357	-		LRK53_RS13995	0.70	-0.6
3,080,357	-		LRK53_RS13995	0.70	-1.9
3,080,496	+				+1.4
3,080,496	+				-0.4
3,080,496	+				+2.8
3,080,497	-				+0.2
3,080,497	-				-2.0
3,080,525	+				-2.5
3,080,525	+				-1.4
3,080,525	+				+0.0
3,080,525	+				-1.3
3,080,526	-				-0.4
3,080,526	-				-1.2
3,080,856	+		LRK53_RS14000	0.14	-1.3
3,080,856	+		LRK53_RS14000	0.14	+1.0
3,080,856	+		LRK53_RS14000	0.14	+0.7
3,080,856	+		LRK53_RS14000	0.14	+0.2
3,080,856	+		LRK53_RS14000	0.14	-0.2
3,080,856	+		LRK53_RS14000	0.14	-1.2
3,080,856	+		LRK53_RS14000	0.14	+0.2
3,080,856	+		LRK53_RS14000	0.14	+0.2
3,080,856	+		LRK53_RS14000	0.14	+1.1
3,080,856	+		LRK53_RS14000	0.14	-1.0
3,080,857	-		LRK53_RS14000	0.14	-0.3
3,080,857	-		LRK53_RS14000	0.14	+0.5
3,080,857	-		LRK53_RS14000	0.14	-0.6
3,080,857	-		LRK53_RS14000	0.14	+0.1
3,080,857	-		LRK53_RS14000	0.14	-1.2
3,080,857	-		LRK53_RS14000	0.14	+0.3
3,080,857	-		LRK53_RS14000	0.14	+0.5
3,080,857	-		LRK53_RS14000	0.14	-2.7
3,080,857	-		LRK53_RS14000	0.14	-0.4
3,080,857	-		LRK53_RS14000	0.14	+0.1
3,080,857	-		LRK53_RS14000	0.14	-2.0
3,080,857	-		LRK53_RS14000	0.14	+1.2
3,080,857	-		LRK53_RS14000	0.14	+1.3
3,080,857	-		LRK53_RS14000	0.14	+0.9
3,080,857	-		LRK53_RS14000	0.14	+1.8
3,080,857	-		LRK53_RS14000	0.14	-2.1
3,080,857	-		LRK53_RS14000	0.14	+0.3
3,080,976	+		LRK53_RS14000	0.20	+1.1
3,080,976	+		LRK53_RS14000	0.20	-1.5
3,080,976	+		LRK53_RS14000	0.20	-2.6
3,080,976	+		LRK53_RS14000	0.20	+1.3
3,080,976	+		LRK53_RS14000	0.20	+0.4
3,080,977	-		LRK53_RS14000	0.20	+1.6
3,080,977	-		LRK53_RS14000	0.20	-0.3
3,080,977	-		LRK53_RS14000	0.20	-0.4
3,081,030	+		LRK53_RS14000	0.22	-0.2
3,081,031	-		LRK53_RS14000	0.22	-2.7
3,081,031	-		LRK53_RS14000	0.22	-2.7
3,081,031	-		LRK53_RS14000	0.22	-3.3
3,081,031	-		LRK53_RS14000	0.22	-2.2
3,081,031	-		LRK53_RS14000	0.22	+1.7
3,081,031	-		LRK53_RS14000	0.22	+0.9
3,081,031	-		LRK53_RS14000	0.22	+0.7
3,081,031	-		LRK53_RS14000	0.22	-0.0
3,081,032	+		LRK53_RS14000	0.22	+0.7
3,081,032	+		LRK53_RS14000	0.22	-1.3
3,081,032	+		LRK53_RS14000	0.22	-1.2
3,081,032	+		LRK53_RS14000	0.22	-1.6
3,081,032	+		LRK53_RS14000	0.22	-1.4
3,081,033	-		LRK53_RS14000	0.22	+0.5
3,081,033	-		LRK53_RS14000	0.22	+1.2
3,081,033	-		LRK53_RS14000	0.22	+3.0
3,081,033	-		LRK53_RS14000	0.22	-1.1
3,081,033	-		LRK53_RS14000	0.22	-0.9
3,081,033	-		LRK53_RS14000	0.22	-1.1
3,081,033	-		LRK53_RS14000	0.22	-0.2
3,081,033	-		LRK53_RS14000	0.22	-1.6
3,081,033	-		LRK53_RS14000	0.22	-1.3
3,081,033	-		LRK53_RS14000	0.22	+0.2
3,081,033	-		LRK53_RS14000	0.22	-1.3
3,081,033	-		LRK53_RS14000	0.22	-0.5
3,081,033	-		LRK53_RS14000	0.22	-0.4
3,081,033	-		LRK53_RS14000	0.22	-0.1
3,081,144	+		LRK53_RS14000	0.27	+0.0
3,081,144	+		LRK53_RS14000	0.27	-0.2
3,081,144	+		LRK53_RS14000	0.27	-0.5
3,081,144	+		LRK53_RS14000	0.27	-0.3
3,081,144	+		LRK53_RS14000	0.27	+0.1
3,081,144	+		LRK53_RS14000	0.27	-1.7
3,081,145	-		LRK53_RS14000	0.28	+0.9
3,081,222	+		LRK53_RS14000	0.31	-1.4
3,081,222	+		LRK53_RS14000	0.31	-1.5
3,081,222	+		LRK53_RS14000	0.31	-1.6
3,081,222	+		LRK53_RS14000	0.31	-1.9
3,081,222	+		LRK53_RS14000	0.31	-0.8
3,081,223	-		LRK53_RS14000	0.31	+1.4
3,081,223	-		LRK53_RS14000	0.31	-0.7
3,081,363	+		LRK53_RS14000	0.37	-3.3
3,081,363	+		LRK53_RS14000	0.37	-1.4
3,081,363	+		LRK53_RS14000	0.37	+0.5
3,081,364	-		LRK53_RS14000	0.38	+0.4
3,081,364	-		LRK53_RS14000	0.38	-0.9
3,081,373	+		LRK53_RS14000	0.38	-1.7
3,081,374	-		LRK53_RS14000	0.38	+1.8
3,081,374	-		LRK53_RS14000	0.38	-3.2
3,081,374	-		LRK53_RS14000	0.38	-1.9
3,081,405	+		LRK53_RS14000	0.39	+0.3
3,081,405	+		LRK53_RS14000	0.39	-0.4
3,081,405	+		LRK53_RS14000	0.39	-0.2
3,081,405	+		LRK53_RS14000	0.39	-1.2
3,081,426	+		LRK53_RS14000	0.40	+0.9
3,081,427	-		LRK53_RS14000	0.40	-1.7
3,081,427	-		LRK53_RS14000	0.40	-1.8
3,081,447	+		LRK53_RS14000	0.41	-1.1
3,081,447	+		LRK53_RS14000	0.41	-0.7
3,081,447	+		LRK53_RS14000	0.41	-0.9
3,081,624	+		LRK53_RS14000	0.49	-0.2
3,081,625	-		LRK53_RS14000	0.49	-2.6
3,081,625	-		LRK53_RS14000	0.49	+0.6
3,081,625	-		LRK53_RS14000	0.49	-0.7
3,081,744	+		LRK53_RS14000	0.55	-0.8
3,081,745	-		LRK53_RS14000	0.55	-0.1
3,081,745	-		LRK53_RS14000	0.55	-2.2
3,082,022	-		LRK53_RS14000	0.68	+0.3
3,082,053	+		LRK53_RS14000	0.69	+1.4
3,082,053	+		LRK53_RS14000	0.69	-0.2
3,082,053	+		LRK53_RS14000	0.69	-0.9
3,082,054	-		LRK53_RS14000	0.69	+0.0
3,082,054	-		LRK53_RS14000	0.69	+0.3
3,082,054	-		LRK53_RS14000	0.69	-1.8
3,082,054	-		LRK53_RS14000	0.69	-0.4
3,082,054	-		LRK53_RS14000	0.69	+0.5
3,082,158	+		LRK53_RS14000	0.74	+1.5
3,082,158	+		LRK53_RS14000	0.74	-2.7
3,082,158	+		LRK53_RS14000	0.74	+1.6
3,082,158	+		LRK53_RS14000	0.74	-0.8
3,082,158	+		LRK53_RS14000	0.74	-0.8
3,082,158	+		LRK53_RS14000	0.74	-0.9
3,082,158	+		LRK53_RS14000	0.74	-0.7
3,082,159	-		LRK53_RS14000	0.74	-1.0
3,082,159	-		LRK53_RS14000	0.74	+0.3
3,082,159	-		LRK53_RS14000	0.74	-1.6
3,082,159	-		LRK53_RS14000	0.74	-0.4
3,082,159	-		LRK53_RS14000	0.74	+0.2
3,082,159	-		LRK53_RS14000	0.74	-0.2
3,082,159	-		LRK53_RS14000	0.74	-1.7
3,082,159	-		LRK53_RS14000	0.74	+0.8
3,082,159	-		LRK53_RS14000	0.74	-1.4
3,082,159	-		LRK53_RS14000	0.74	+1.0
3,082,512	+				-0.4
3,082,513	-				-0.9
3,082,513	-				+0.3
3,082,513	-				-0.6
3,082,597	-				-0.7
3,082,689	+				-0.9
3,082,689	+				-1.2
3,082,689	+				-1.5
3,082,689	+				-2.4
3,082,689	+				-0.7
3,082,689	+				-0.9
3,082,689	+				+1.7
3,082,689	+				-0.1
3,082,689	+				-1.9
3,082,689	+				+0.9
3,082,690	-				-1.7
3,082,690	-				-0.2
3,082,690	-				+2.2
3,082,690	-				-2.0
3,082,690	-				-1.6
3,082,690	-				-0.5
3,082,690	-				-2.5
3,082,719	+				-2.0
3,082,719	+				-0.8
3,082,719	+				-1.1
3,082,720	-				-0.9
3,082,941	-		LRK53_RS14005	0.41	-0.7
3,083,297	-				-0.1
3,083,377	+				-1.5
3,083,470	+		LRK53_RS14010	0.23	+1.1
3,083,521	+		LRK53_RS14010	0.32	+1.0
3,083,521	+		LRK53_RS14010	0.32	+1.8
3,083,522	-		LRK53_RS14010	0.32	+0.0
3,083,522	-		LRK53_RS14010	0.32	-0.6
3,083,546	-		LRK53_RS14010	0.36	-0.6
3,083,551	+		LRK53_RS14010	0.37	-0.7
3,083,551	+		LRK53_RS14010	0.37	+0.1
3,083,551	+		LRK53_RS14010	0.37	-1.7
3,083,551	+		LRK53_RS14010	0.37	+1.9
3,083,551	+		LRK53_RS14010	0.37	+1.4
3,083,551	+		LRK53_RS14010	0.37	-0.9
3,083,552	-		LRK53_RS14010	0.37	+0.1
3,083,552	-		LRK53_RS14010	0.37	-0.4
3,083,552	-		LRK53_RS14010	0.37	-0.7