Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04700

Experiment: Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS04695 and LRK53_RS04700 are separated by 83 nucleotidesLRK53_RS04700 and LRK53_RS04705 overlap by 4 nucleotides LRK53_RS04695: LRK53_RS04695 - homoserine O-succinyltransferase, at 1,093,267 to 1,094,289 _RS04695 LRK53_RS04700: LRK53_RS04700 - cystathionine gamma-synthase, at 1,094,373 to 1,095,566 _RS04700 LRK53_RS04705: LRK53_RS04705 - homoserine dehydrogenase, at 1,095,563 to 1,096,645 _RS04705 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1093.391 kb on - strand, within LRK53_RS04695at 1093.391 kb on - strand, within LRK53_RS04695at 1093.391 kb on - strand, within LRK53_RS04695at 1093.391 kb on - strand, within LRK53_RS04695at 1093.391 kb on - strand, within LRK53_RS04695at 1093.423 kb on + strand, within LRK53_RS04695at 1093.423 kb on + strand, within LRK53_RS04695at 1093.423 kb on + strand, within LRK53_RS04695at 1093.423 kb on + strand, within LRK53_RS04695at 1093.423 kb on + strand, within LRK53_RS04695at 1093.423 kb on + strand, within LRK53_RS04695at 1093.423 kb on + strand, within LRK53_RS04695at 1093.423 kb on + strand, within LRK53_RS04695at 1093.424 kb on - strand, within LRK53_RS04695at 1093.424 kb on - strand, within LRK53_RS04695at 1093.424 kb on - strand, within LRK53_RS04695at 1093.715 kb on - strand, within LRK53_RS04695at 1093.915 kb on + strand, within LRK53_RS04695at 1093.915 kb on + strand, within LRK53_RS04695at 1093.915 kb on + strand, within LRK53_RS04695at 1093.916 kb on - strand, within LRK53_RS04695at 1093.916 kb on - strand, within LRK53_RS04695at 1093.999 kb on + strand, within LRK53_RS04695at 1093.999 kb on + strand, within LRK53_RS04695at 1093.999 kb on + strand, within LRK53_RS04695at 1094.222 kb on - strandat 1094.399 kb on + strandat 1094.478 kb on + strandat 1094.478 kb on + strandat 1094.478 kb on + strandat 1094.478 kb on + strandat 1094.478 kb on + strandat 1094.478 kb on + strandat 1094.479 kb on - strandat 1094.479 kb on - strandat 1094.479 kb on - strandat 1094.479 kb on - strandat 1094.479 kb on - strandat 1094.479 kb on - strandat 1094.479 kb on - strandat 1094.479 kb on - strandat 1094.479 kb on - strandat 1094.479 kb on - strandat 1094.511 kb on + strand, within LRK53_RS04700at 1094.512 kb on - strand, within LRK53_RS04700at 1094.512 kb on - strand, within LRK53_RS04700at 1094.512 kb on - strand, within LRK53_RS04700at 1094.518 kb on - strand, within LRK53_RS04700at 1094.518 kb on - strand, within LRK53_RS04700at 1094.830 kb on + strand, within LRK53_RS04700at 1094.830 kb on + strand, within LRK53_RS04700at 1094.830 kb on + strand, within LRK53_RS04700at 1094.831 kb on - strand, within LRK53_RS04700at 1094.973 kb on + strand, within LRK53_RS04700at 1094.973 kb on + strand, within LRK53_RS04700at 1094.973 kb on + strand, within LRK53_RS04700at 1094.973 kb on + strand, within LRK53_RS04700at 1094.973 kb on + strand, within LRK53_RS04700at 1094.973 kb on + strand, within LRK53_RS04700at 1094.973 kb on + strand, within LRK53_RS04700at 1094.973 kb on + strand, within LRK53_RS04700at 1094.973 kb on + strand, within LRK53_RS04700at 1094.974 kb on - strand, within LRK53_RS04700at 1094.974 kb on - strand, within LRK53_RS04700at 1094.974 kb on - strand, within LRK53_RS04700at 1094.974 kb on - strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.093 kb on + strand, within LRK53_RS04700at 1095.094 kb on - strand, within LRK53_RS04700at 1095.094 kb on - strand, within LRK53_RS04700at 1095.094 kb on - strand, within LRK53_RS04700at 1095.094 kb on - strand, within LRK53_RS04700at 1095.094 kb on - strand, within LRK53_RS04700at 1095.094 kb on - strand, within LRK53_RS04700at 1095.094 kb on - strand, within LRK53_RS04700at 1095.094 kb on - strand, within LRK53_RS04700at 1095.094 kb on - strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.204 kb on + strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.205 kb on - strand, within LRK53_RS04700at 1095.208 kb on - strand, within LRK53_RS04700at 1095.336 kb on + strand, within LRK53_RS04700at 1095.337 kb on - strand, within LRK53_RS04700at 1095.337 kb on - strand, within LRK53_RS04700at 1095.337 kb on - strand, within LRK53_RS04700at 1096.072 kb on + strand, within LRK53_RS04705at 1096.072 kb on + strand, within LRK53_RS04705at 1096.072 kb on + strand, within LRK53_RS04705at 1096.073 kb on - strand, within LRK53_RS04705at 1096.073 kb on - strand, within LRK53_RS04705at 1096.073 kb on - strand, within LRK53_RS04705at 1096.073 kb on - strand, within LRK53_RS04705at 1096.073 kb on - strand, within LRK53_RS04705at 1096.142 kb on + strand, within LRK53_RS04705at 1096.142 kb on + strand, within LRK53_RS04705at 1096.196 kb on + strand, within LRK53_RS04705at 1096.196 kb on + strand, within LRK53_RS04705at 1096.197 kb on - strand, within LRK53_RS04705at 1096.197 kb on - strand, within LRK53_RS04705at 1096.197 kb on - strand, within LRK53_RS04705at 1096.197 kb on - strand, within LRK53_RS04705at 1096.199 kb on - strand, within LRK53_RS04705at 1096.199 kb on - strand, within LRK53_RS04705at 1096.380 kb on + strand, within LRK53_RS04705at 1096.380 kb on + strand, within LRK53_RS04705at 1096.380 kb on + strand, within LRK53_RS04705at 1096.380 kb on + strand, within LRK53_RS04705at 1096.380 kb on + strand, within LRK53_RS04705at 1096.380 kb on + strand, within LRK53_RS04705at 1096.381 kb on - strand, within LRK53_RS04705at 1096.381 kb on - strand, within LRK53_RS04705at 1096.381 kb on - strand, within LRK53_RS04705at 1096.381 kb on - strand, within LRK53_RS04705at 1096.381 kb on - strand, within LRK53_RS04705at 1096.514 kb on + strand, within LRK53_RS04705at 1096.515 kb on - strand, within LRK53_RS04705at 1096.515 kb on - strand, within LRK53_RS04705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM
remove
1,093,391 - LRK53_RS04695 0.12 -1.0
1,093,391 - LRK53_RS04695 0.12 -0.6
1,093,391 - LRK53_RS04695 0.12 -1.4
1,093,391 - LRK53_RS04695 0.12 -0.6
1,093,391 - LRK53_RS04695 0.12 -0.3
1,093,423 + LRK53_RS04695 0.15 -1.2
1,093,423 + LRK53_RS04695 0.15 -1.0
1,093,423 + LRK53_RS04695 0.15 -0.3
1,093,423 + LRK53_RS04695 0.15 -0.4
1,093,423 + LRK53_RS04695 0.15 -2.1
1,093,423 + LRK53_RS04695 0.15 -0.0
1,093,423 + LRK53_RS04695 0.15 -0.9
1,093,423 + LRK53_RS04695 0.15 -2.2
1,093,424 - LRK53_RS04695 0.15 -1.0
1,093,424 - LRK53_RS04695 0.15 -1.3
1,093,424 - LRK53_RS04695 0.15 +1.1
1,093,715 - LRK53_RS04695 0.44 -1.3
1,093,915 + LRK53_RS04695 0.63 -2.7
1,093,915 + LRK53_RS04695 0.63 -1.8
1,093,915 + LRK53_RS04695 0.63 -1.0
1,093,916 - LRK53_RS04695 0.63 -1.1
1,093,916 - LRK53_RS04695 0.63 -0.6
1,093,999 + LRK53_RS04695 0.72 +1.2
1,093,999 + LRK53_RS04695 0.72 +1.5
1,093,999 + LRK53_RS04695 0.72 -1.8
1,094,222 - -0.3
1,094,399 + -0.3
1,094,478 + -0.5
1,094,478 + -1.0
1,094,478 + -2.3
1,094,478 + -1.6
1,094,478 + -0.7
1,094,478 + -1.0
1,094,479 - -0.0
1,094,479 - -0.9
1,094,479 - -0.0
1,094,479 - -0.6
1,094,479 - -2.4
1,094,479 - -0.8
1,094,479 - -1.8
1,094,479 - -1.9
1,094,479 - +0.5
1,094,479 - -1.0
1,094,511 + LRK53_RS04700 0.12 -0.6
1,094,512 - LRK53_RS04700 0.12 -0.9
1,094,512 - LRK53_RS04700 0.12 -1.4
1,094,512 - LRK53_RS04700 0.12 -1.5
1,094,518 - LRK53_RS04700 0.12 +0.6
1,094,518 - LRK53_RS04700 0.12 -2.2
1,094,830 + LRK53_RS04700 0.38 -0.3
1,094,830 + LRK53_RS04700 0.38 -1.3
1,094,830 + LRK53_RS04700 0.38 -0.0
1,094,831 - LRK53_RS04700 0.38 +0.3
1,094,973 + LRK53_RS04700 0.50 +1.0
1,094,973 + LRK53_RS04700 0.50 -2.2
1,094,973 + LRK53_RS04700 0.50 -2.0
1,094,973 + LRK53_RS04700 0.50 -1.2
1,094,973 + LRK53_RS04700 0.50 -0.5
1,094,973 + LRK53_RS04700 0.50 -2.1
1,094,973 + LRK53_RS04700 0.50 -1.0
1,094,973 + LRK53_RS04700 0.50 -0.0
1,094,973 + LRK53_RS04700 0.50 -0.0
1,094,974 - LRK53_RS04700 0.50 -0.6
1,094,974 - LRK53_RS04700 0.50 -3.5
1,094,974 - LRK53_RS04700 0.50 -0.6
1,094,974 - LRK53_RS04700 0.50 -0.4
1,095,093 + LRK53_RS04700 0.60 -0.4
1,095,093 + LRK53_RS04700 0.60 -1.2
1,095,093 + LRK53_RS04700 0.60 -0.2
1,095,093 + LRK53_RS04700 0.60 -3.1
1,095,093 + LRK53_RS04700 0.60 -1.1
1,095,093 + LRK53_RS04700 0.60 -0.0
1,095,093 + LRK53_RS04700 0.60 +0.3
1,095,093 + LRK53_RS04700 0.60 -0.7
1,095,093 + LRK53_RS04700 0.60 -2.5
1,095,093 + LRK53_RS04700 0.60 -1.3
1,095,093 + LRK53_RS04700 0.60 -1.5
1,095,093 + LRK53_RS04700 0.60 +1.7
1,095,094 - LRK53_RS04700 0.60 -1.5
1,095,094 - LRK53_RS04700 0.60 -0.0
1,095,094 - LRK53_RS04700 0.60 -0.8
1,095,094 - LRK53_RS04700 0.60 -2.0
1,095,094 - LRK53_RS04700 0.60 -0.3
1,095,094 - LRK53_RS04700 0.60 -0.9
1,095,094 - LRK53_RS04700 0.60 +0.4
1,095,094 - LRK53_RS04700 0.60 -2.5
1,095,094 - LRK53_RS04700 0.60 -0.2
1,095,204 + LRK53_RS04700 0.70 +0.0
1,095,204 + LRK53_RS04700 0.70 +1.9
1,095,204 + LRK53_RS04700 0.70 -1.7
1,095,204 + LRK53_RS04700 0.70 +0.2
1,095,204 + LRK53_RS04700 0.70 -0.9
1,095,204 + LRK53_RS04700 0.70 -0.6
1,095,204 + LRK53_RS04700 0.70 -0.5
1,095,204 + LRK53_RS04700 0.70 -0.6
1,095,204 + LRK53_RS04700 0.70 -0.8
1,095,204 + LRK53_RS04700 0.70 -1.2
1,095,204 + LRK53_RS04700 0.70 -0.9
1,095,204 + LRK53_RS04700 0.70 +2.3
1,095,204 + LRK53_RS04700 0.70 -1.0
1,095,204 + LRK53_RS04700 0.70 -1.7
1,095,204 + LRK53_RS04700 0.70 -0.5
1,095,204 + LRK53_RS04700 0.70 +0.5
1,095,204 + LRK53_RS04700 0.70 -0.8
1,095,204 + LRK53_RS04700 0.70 +1.1
1,095,204 + LRK53_RS04700 0.70 +0.7
1,095,204 + LRK53_RS04700 0.70 -1.0
1,095,204 + LRK53_RS04700 0.70 -0.2
1,095,204 + LRK53_RS04700 0.70 +2.2
1,095,205 - LRK53_RS04700 0.70 -1.9
1,095,205 - LRK53_RS04700 0.70 +0.7
1,095,205 - LRK53_RS04700 0.70 -0.5
1,095,205 - LRK53_RS04700 0.70 -2.3
1,095,205 - LRK53_RS04700 0.70 -0.6
1,095,205 - LRK53_RS04700 0.70 -0.8
1,095,205 - LRK53_RS04700 0.70 -0.3
1,095,205 - LRK53_RS04700 0.70 -1.3
1,095,205 - LRK53_RS04700 0.70 -0.8
1,095,205 - LRK53_RS04700 0.70 -1.2
1,095,205 - LRK53_RS04700 0.70 -3.7
1,095,205 - LRK53_RS04700 0.70 -2.8
1,095,205 - LRK53_RS04700 0.70 -0.3
1,095,205 - LRK53_RS04700 0.70 +0.1
1,095,205 - LRK53_RS04700 0.70 -0.9
1,095,205 - LRK53_RS04700 0.70 -2.4
1,095,208 - LRK53_RS04700 0.70 +0.0
1,095,336 + LRK53_RS04700 0.81 -2.8
1,095,337 - LRK53_RS04700 0.81 -1.4
1,095,337 - LRK53_RS04700 0.81 -0.3
1,095,337 - LRK53_RS04700 0.81 -0.9
1,096,072 + LRK53_RS04705 0.47 +1.8
1,096,072 + LRK53_RS04705 0.47 +0.5
1,096,072 + LRK53_RS04705 0.47 -1.3
1,096,073 - LRK53_RS04705 0.47 -1.5
1,096,073 - LRK53_RS04705 0.47 -2.2
1,096,073 - LRK53_RS04705 0.47 +0.6
1,096,073 - LRK53_RS04705 0.47 -0.9
1,096,073 - LRK53_RS04705 0.47 -1.3
1,096,142 + LRK53_RS04705 0.53 -1.2
1,096,142 + LRK53_RS04705 0.53 +0.8
1,096,196 + LRK53_RS04705 0.58 -0.2
1,096,196 + LRK53_RS04705 0.58 -1.4
1,096,197 - LRK53_RS04705 0.59 -0.7
1,096,197 - LRK53_RS04705 0.59 -1.8
1,096,197 - LRK53_RS04705 0.59 -0.3
1,096,197 - LRK53_RS04705 0.59 -3.0
1,096,199 - LRK53_RS04705 0.59 +1.0
1,096,199 - LRK53_RS04705 0.59 -1.9
1,096,380 + LRK53_RS04705 0.75 -2.6
1,096,380 + LRK53_RS04705 0.75 +0.0
1,096,380 + LRK53_RS04705 0.75 +2.5
1,096,380 + LRK53_RS04705 0.75 +0.5
1,096,380 + LRK53_RS04705 0.75 -1.0
1,096,380 + LRK53_RS04705 0.75 -0.0
1,096,381 - LRK53_RS04705 0.76 -0.9
1,096,381 - LRK53_RS04705 0.76 -0.7
1,096,381 - LRK53_RS04705 0.76 -1.4
1,096,381 - LRK53_RS04705 0.76 -0.7
1,096,381 - LRK53_RS04705 0.76 -0.2
1,096,514 + LRK53_RS04705 0.88 +0.1
1,096,515 - LRK53_RS04705 0.88 +0.4
1,096,515 - LRK53_RS04705 0.88 +0.1

Or see this region's nucleotide sequence