Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04065

Experiment: Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS04060 and LRK53_RS04065 are separated by 144 nucleotidesLRK53_RS04065 and LRK53_RS04070 are separated by 109 nucleotides LRK53_RS04060: LRK53_RS04060 - ribosome small subunit-dependent GTPase A, at 950,851 to 951,906 _RS04060 LRK53_RS04065: LRK53_RS04065 - flavohemoglobin expression-modulating QEGLA motif protein, at 952,051 to 953,340 _RS04065 LRK53_RS04070: LRK53_RS04070 - NADP-dependent malic enzyme, at 953,450 to 955,741 _RS04070 Position (kb) 952 953 954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.949 kb on + strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.950 kb on - strandat 951.952 kb on + strandat 951.953 kb on - strandat 951.953 kb on - strandat 952.195 kb on + strand, within LRK53_RS04065at 952.195 kb on + strand, within LRK53_RS04065at 952.196 kb on - strand, within LRK53_RS04065at 952.196 kb on - strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.231 kb on + strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.232 kb on - strand, within LRK53_RS04065at 952.330 kb on + strand, within LRK53_RS04065at 952.330 kb on + strand, within LRK53_RS04065at 952.330 kb on + strand, within LRK53_RS04065at 952.330 kb on + strand, within LRK53_RS04065at 952.331 kb on - strand, within LRK53_RS04065at 952.331 kb on - strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.423 kb on + strand, within LRK53_RS04065at 952.424 kb on - strand, within LRK53_RS04065at 952.424 kb on - strand, within LRK53_RS04065at 952.424 kb on - strand, within LRK53_RS04065at 952.424 kb on - strand, within LRK53_RS04065at 952.483 kb on + strand, within LRK53_RS04065at 952.484 kb on - strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.574 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.703 kb on - strand, within LRK53_RS04065at 952.703 kb on - strand, within LRK53_RS04065at 952.703 kb on - strand, within LRK53_RS04065at 952.703 kb on - strand, within LRK53_RS04065at 952.703 kb on - strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 953.062 kb on + strand, within LRK53_RS04065at 953.062 kb on + strand, within LRK53_RS04065at 953.062 kb on + strand, within LRK53_RS04065at 953.063 kb on - strand, within LRK53_RS04065at 953.063 kb on - strand, within LRK53_RS04065at 953.063 kb on - strand, within LRK53_RS04065at 953.079 kb on + strand, within LRK53_RS04065at 953.366 kb on + strandat 953.367 kb on - strandat 953.414 kb on + strandat 953.414 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM
remove
951,949 + -0.4
951,949 + +0.2
951,949 + -1.8
951,949 + -0.1
951,949 + +0.6
951,949 + -0.8
951,949 + +0.3
951,949 + +1.3
951,949 + -0.5
951,949 + -1.0
951,949 + +0.3
951,949 + +1.9
951,949 + -0.3
951,949 + +0.5
951,949 + -0.0
951,949 + +2.0
951,949 + -1.5
951,949 + -2.4
951,950 - -0.2
951,950 - +2.0
951,950 - -3.2
951,950 - +0.3
951,950 - -0.6
951,950 - -1.2
951,950 - -1.1
951,950 - -0.4
951,950 - -1.0
951,950 - +1.7
951,950 - -0.9
951,950 - -0.0
951,952 + +0.1
951,953 - -0.0
951,953 - -1.8
952,195 + LRK53_RS04065 0.11 -0.6
952,195 + LRK53_RS04065 0.11 -0.8
952,196 - LRK53_RS04065 0.11 +0.0
952,196 - LRK53_RS04065 0.11 -0.5
952,231 + LRK53_RS04065 0.14 -0.1
952,231 + LRK53_RS04065 0.14 -1.8
952,231 + LRK53_RS04065 0.14 -0.8
952,231 + LRK53_RS04065 0.14 -0.2
952,231 + LRK53_RS04065 0.14 -0.0
952,231 + LRK53_RS04065 0.14 +0.1
952,231 + LRK53_RS04065 0.14 -0.2
952,231 + LRK53_RS04065 0.14 -0.2
952,231 + LRK53_RS04065 0.14 -0.5
952,231 + LRK53_RS04065 0.14 -0.9
952,231 + LRK53_RS04065 0.14 -0.3
952,231 + LRK53_RS04065 0.14 -0.6
952,231 + LRK53_RS04065 0.14 -0.4
952,232 - LRK53_RS04065 0.14 +1.2
952,232 - LRK53_RS04065 0.14 -0.2
952,232 - LRK53_RS04065 0.14 +2.3
952,232 - LRK53_RS04065 0.14 -2.6
952,232 - LRK53_RS04065 0.14 -1.0
952,232 - LRK53_RS04065 0.14 -1.9
952,232 - LRK53_RS04065 0.14 -0.9
952,232 - LRK53_RS04065 0.14 -0.0
952,232 - LRK53_RS04065 0.14 -0.9
952,232 - LRK53_RS04065 0.14 -0.9
952,232 - LRK53_RS04065 0.14 +0.6
952,232 - LRK53_RS04065 0.14 +1.6
952,232 - LRK53_RS04065 0.14 +2.4
952,232 - LRK53_RS04065 0.14 -0.8
952,232 - LRK53_RS04065 0.14 +1.2
952,330 + LRK53_RS04065 0.22 +0.6
952,330 + LRK53_RS04065 0.22 -0.8
952,330 + LRK53_RS04065 0.22 -2.8
952,330 + LRK53_RS04065 0.22 -1.5
952,331 - LRK53_RS04065 0.22 -0.5
952,331 - LRK53_RS04065 0.22 +1.0
952,423 + LRK53_RS04065 0.29 -1.0
952,423 + LRK53_RS04065 0.29 +1.3
952,423 + LRK53_RS04065 0.29 +1.0
952,423 + LRK53_RS04065 0.29 -0.6
952,423 + LRK53_RS04065 0.29 -0.4
952,423 + LRK53_RS04065 0.29 -1.1
952,423 + LRK53_RS04065 0.29 +0.5
952,423 + LRK53_RS04065 0.29 -0.4
952,423 + LRK53_RS04065 0.29 -1.0
952,423 + LRK53_RS04065 0.29 -2.2
952,424 - LRK53_RS04065 0.29 -0.7
952,424 - LRK53_RS04065 0.29 -1.3
952,424 - LRK53_RS04065 0.29 +0.4
952,424 - LRK53_RS04065 0.29 +0.8
952,483 + LRK53_RS04065 0.33 +0.8
952,484 - LRK53_RS04065 0.34 +1.2
952,559 + LRK53_RS04065 0.39 -1.2
952,559 + LRK53_RS04065 0.39 -0.6
952,559 + LRK53_RS04065 0.39 -2.2
952,559 + LRK53_RS04065 0.39 -0.8
952,559 + LRK53_RS04065 0.39 -0.5
952,559 + LRK53_RS04065 0.39 -0.7
952,559 + LRK53_RS04065 0.39 +1.7
952,559 + LRK53_RS04065 0.39 -1.0
952,559 + LRK53_RS04065 0.39 -0.4
952,560 - LRK53_RS04065 0.39 -0.2
952,560 - LRK53_RS04065 0.39 +1.1
952,560 - LRK53_RS04065 0.39 -1.1
952,560 - LRK53_RS04065 0.39 +0.4
952,560 - LRK53_RS04065 0.39 +1.2
952,560 - LRK53_RS04065 0.39 -2.2
952,574 + LRK53_RS04065 0.41 -1.0
952,702 + LRK53_RS04065 0.50 -1.3
952,702 + LRK53_RS04065 0.50 -1.2
952,702 + LRK53_RS04065 0.50 -0.2
952,702 + LRK53_RS04065 0.50 +0.2
952,702 + LRK53_RS04065 0.50 +0.2
952,702 + LRK53_RS04065 0.50 -0.1
952,702 + LRK53_RS04065 0.50 +1.3
952,703 - LRK53_RS04065 0.51 +2.1
952,703 - LRK53_RS04065 0.51 +1.6
952,703 - LRK53_RS04065 0.51 +0.8
952,703 - LRK53_RS04065 0.51 -0.1
952,703 - LRK53_RS04065 0.51 -1.5
952,948 + LRK53_RS04065 0.70 -2.0
952,948 + LRK53_RS04065 0.70 -0.7
952,948 + LRK53_RS04065 0.70 +0.1
952,948 + LRK53_RS04065 0.70 +1.0
952,948 + LRK53_RS04065 0.70 -0.6
952,948 + LRK53_RS04065 0.70 -0.7
952,948 + LRK53_RS04065 0.70 -0.8
952,949 - LRK53_RS04065 0.70 +0.1
952,949 - LRK53_RS04065 0.70 -1.3
952,949 - LRK53_RS04065 0.70 -0.8
952,949 - LRK53_RS04065 0.70 +1.2
952,949 - LRK53_RS04065 0.70 +0.4
952,949 - LRK53_RS04065 0.70 -0.9
952,949 - LRK53_RS04065 0.70 -0.5
952,949 - LRK53_RS04065 0.70 -0.3
952,949 - LRK53_RS04065 0.70 -1.9
952,949 - LRK53_RS04065 0.70 +1.3
952,949 - LRK53_RS04065 0.70 -0.2
952,949 - LRK53_RS04065 0.70 -0.0
952,949 - LRK53_RS04065 0.70 +1.2
952,949 - LRK53_RS04065 0.70 +0.2
952,949 - LRK53_RS04065 0.70 -0.8
952,954 + LRK53_RS04065 0.70 -2.8
952,954 + LRK53_RS04065 0.70 +1.1
952,954 + LRK53_RS04065 0.70 -1.0
952,954 + LRK53_RS04065 0.70 -0.9
952,954 + LRK53_RS04065 0.70 +0.5
952,954 + LRK53_RS04065 0.70 -1.1
952,954 + LRK53_RS04065 0.70 -0.4
952,954 + LRK53_RS04065 0.70 -2.3
952,954 + LRK53_RS04065 0.70 +0.9
952,954 + LRK53_RS04065 0.70 -1.3
952,955 - LRK53_RS04065 0.70 +1.4
952,955 - LRK53_RS04065 0.70 +0.1
952,955 - LRK53_RS04065 0.70 -0.2
952,955 - LRK53_RS04065 0.70 -0.4
952,955 - LRK53_RS04065 0.70 +0.6
952,955 - LRK53_RS04065 0.70 -0.2
952,955 - LRK53_RS04065 0.70 +0.3
953,062 + LRK53_RS04065 0.78 +0.5
953,062 + LRK53_RS04065 0.78 +0.2
953,062 + LRK53_RS04065 0.78 -0.0
953,063 - LRK53_RS04065 0.78 -2.1
953,063 - LRK53_RS04065 0.78 +1.6
953,063 - LRK53_RS04065 0.78 -0.5
953,079 + LRK53_RS04065 0.80 +0.3
953,366 + -1.9
953,367 - +0.4
953,414 + -1.1
953,414 + -0.6

Or see this region's nucleotide sequence