Experiment: Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03890 and LRK53_RS03895 overlap by 4 nucleotides LRK53_RS03895 and LRK53_RS03900 are separated by 66 nucleotides LRK53_RS03900 and LRK53_RS03905 are separated by 162 nucleotides LRK53_RS03905 and LRK53_RS03910 are separated by 150 nucleotides
LRK53_RS03890: LRK53_RS03890 - type II toxin-antitoxin system HipA family toxin, at 913,226 to 914,527
_RS03890
LRK53_RS03895: LRK53_RS03895 - helix-turn-helix domain-containing protein, at 914,524 to 914,841
_RS03895
LRK53_RS03900: LRK53_RS03900 - NAD(P)/FAD-dependent oxidoreductase, at 914,908 to 916,539
_RS03900
LRK53_RS03905: LRK53_RS03905 - hypothetical protein, at 916,702 to 916,923
_RS03905
LRK53_RS03910: LRK53_RS03910 - DUF1993 domain-containing protein, at 917,074 to 917,580
_RS03910
Position (kb) 914
915
916
917 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 914.378 kb on + strand, within LRK53_RS03890 at 914.379 kb on - strand, within LRK53_RS03890 at 914.394 kb on - strand, within LRK53_RS03890 at 914.439 kb on + strand at 914.439 kb on + strand at 914.440 kb on - strand at 914.440 kb on - strand at 914.440 kb on - strand at 914.440 kb on - strand at 914.594 kb on + strand, within LRK53_RS03895 at 914.594 kb on + strand, within LRK53_RS03895 at 914.594 kb on + strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.595 kb on - strand, within LRK53_RS03895 at 914.842 kb on + strand at 914.843 kb on - strand at 914.868 kb on + strand at 914.870 kb on + strand at 914.870 kb on + strand at 914.870 kb on + strand at 914.871 kb on - strand at 914.871 kb on - strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.874 kb on + strand at 914.875 kb on - strand at 914.875 kb on - strand at 914.875 kb on - strand at 914.932 kb on + strand at 914.932 kb on + strand at 914.932 kb on + strand at 914.933 kb on - strand at 914.933 kb on - strand at 914.933 kb on - strand at 914.933 kb on - strand at 914.933 kb on - strand at 914.933 kb on - strand at 914.933 kb on - strand at 914.933 kb on - strand at 915.174 kb on - strand, within LRK53_RS03900 at 915.221 kb on + strand, within LRK53_RS03900 at 915.221 kb on + strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.222 kb on - strand, within LRK53_RS03900 at 915.299 kb on + strand, within LRK53_RS03900 at 915.300 kb on - strand, within LRK53_RS03900 at 915.300 kb on - strand, within LRK53_RS03900 at 915.300 kb on - strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.320 kb on + strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.321 kb on - strand, within LRK53_RS03900 at 915.385 kb on - strand, within LRK53_RS03900 at 915.452 kb on + strand, within LRK53_RS03900 at 915.452 kb on + strand, within LRK53_RS03900 at 915.453 kb on - strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.536 kb on + strand, within LRK53_RS03900 at 915.537 kb on - strand, within LRK53_RS03900 at 915.537 kb on - strand, within LRK53_RS03900 at 915.537 kb on - strand, within LRK53_RS03900 at 915.537 kb on - strand, within LRK53_RS03900 at 915.537 kb on - strand, within LRK53_RS03900 at 915.537 kb on - strand, within LRK53_RS03900 at 915.538 kb on + strand, within LRK53_RS03900 at 915.538 kb on + strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.539 kb on - strand, within LRK53_RS03900 at 915.575 kb on + strand, within LRK53_RS03900 at 915.576 kb on - strand, within LRK53_RS03900 at 915.576 kb on - strand, within LRK53_RS03900 at 915.576 kb on - strand, within LRK53_RS03900 at 915.576 kb on - strand, within LRK53_RS03900 at 915.576 kb on - strand, within LRK53_RS03900 at 915.720 kb on + strand, within LRK53_RS03900 at 915.916 kb on + strand, within LRK53_RS03900 at 915.950 kb on + strand, within LRK53_RS03900 at 915.950 kb on + strand, within LRK53_RS03900 at 915.951 kb on - strand, within LRK53_RS03900 at 915.951 kb on - strand, within LRK53_RS03900 at 916.056 kb on + strand, within LRK53_RS03900 at 916.286 kb on + strand, within LRK53_RS03900 at 916.286 kb on + strand, within LRK53_RS03900 at 916.286 kb on + strand, within LRK53_RS03900 at 916.286 kb on + strand, within LRK53_RS03900 at 916.286 kb on + strand, within LRK53_RS03900 at 916.286 kb on + strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.287 kb on - strand, within LRK53_RS03900 at 916.376 kb on + strand at 916.377 kb on - strand at 916.434 kb on - strand at 916.585 kb on + strand at 916.585 kb on + strand at 916.585 kb on + strand at 916.585 kb on + strand at 916.586 kb on - strand at 916.586 kb on - strand at 916.760 kb on + strand, within LRK53_RS03905 at 916.760 kb on + strand, within LRK53_RS03905 at 916.760 kb on + strand, within LRK53_RS03905 at 916.761 kb on - strand, within LRK53_RS03905 at 916.761 kb on - strand, within LRK53_RS03905 at 916.761 kb on - strand, within LRK53_RS03905 at 916.761 kb on - strand, within LRK53_RS03905 at 917.135 kb on + strand, within LRK53_RS03910 at 917.186 kb on + strand, within LRK53_RS03910 at 917.186 kb on + strand, within LRK53_RS03910 at 917.186 kb on + strand, within LRK53_RS03910 at 917.186 kb on + strand, within LRK53_RS03910 at 917.187 kb on - strand, within LRK53_RS03910 at 917.187 kb on - strand, within LRK53_RS03910 at 917.187 kb on - strand, within LRK53_RS03910 at 917.285 kb on + strand, within LRK53_RS03910 at 917.285 kb on + strand, within LRK53_RS03910 at 917.285 kb on + strand, within LRK53_RS03910 at 917.286 kb on - strand, within LRK53_RS03910 at 917.286 kb on - strand, within LRK53_RS03910 at 917.312 kb on + strand, within LRK53_RS03910 at 917.312 kb on + strand, within LRK53_RS03910 at 917.312 kb on + strand, within LRK53_RS03910 at 917.312 kb on + strand, within LRK53_RS03910 at 917.312 kb on + strand, within LRK53_RS03910 at 917.312 kb on + strand, within LRK53_RS03910 at 917.312 kb on + strand, within LRK53_RS03910 at 917.312 kb on + strand, within LRK53_RS03910 at 917.312 kb on + strand, within LRK53_RS03910 at 917.313 kb on - strand, within LRK53_RS03910 at 917.313 kb on - strand, within LRK53_RS03910 at 917.313 kb on - strand, within LRK53_RS03910 at 917.313 kb on - strand, within LRK53_RS03910 at 917.313 kb on - strand, within LRK53_RS03910 at 917.313 kb on - strand, within LRK53_RS03910 at 917.313 kb on - strand, within LRK53_RS03910 at 917.313 kb on - strand, within LRK53_RS03910 at 917.313 kb on - strand, within LRK53_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM remove 914,378 + LRK53_RS03890 0.88 -0.7 914,379 - LRK53_RS03890 0.89 +0.4 914,394 - LRK53_RS03890 0.90 -2.4 914,439 + -1.8 914,439 + -0.3 914,440 - -2.6 914,440 - -1.2 914,440 - -0.5 914,440 - -0.1 914,594 + LRK53_RS03895 0.22 -1.3 914,594 + LRK53_RS03895 0.22 -0.6 914,594 + LRK53_RS03895 0.22 -0.8 914,595 - LRK53_RS03895 0.22 -0.4 914,595 - LRK53_RS03895 0.22 -1.4 914,595 - LRK53_RS03895 0.22 -2.0 914,595 - LRK53_RS03895 0.22 -1.6 914,595 - LRK53_RS03895 0.22 +0.3 914,595 - LRK53_RS03895 0.22 -1.1 914,595 - LRK53_RS03895 0.22 -0.9 914,595 - LRK53_RS03895 0.22 -0.5 914,842 + +1.6 914,843 - -2.2 914,868 + -0.6 914,870 + -1.0 914,870 + -1.4 914,870 + +1.6 914,871 - -0.6 914,871 - -2.1 914,874 + +0.8 914,874 + -0.4 914,874 + -1.2 914,874 + -1.0 914,874 + -1.7 914,874 + +2.0 914,874 + +0.7 914,874 + +0.8 914,875 - +1.9 914,875 - -0.9 914,875 - -1.9 914,932 + -2.5 914,932 + -1.5 914,932 + -3.2 914,933 - +0.2 914,933 - -0.2 914,933 - +1.2 914,933 - -0.8 914,933 - -0.4 914,933 - -0.6 914,933 - -0.0 914,933 - -1.0 915,174 - LRK53_RS03900 0.16 -0.4 915,221 + LRK53_RS03900 0.19 -3.1 915,221 + LRK53_RS03900 0.19 -0.0 915,222 - LRK53_RS03900 0.19 -0.3 915,222 - LRK53_RS03900 0.19 -2.1 915,222 - LRK53_RS03900 0.19 -0.0 915,222 - LRK53_RS03900 0.19 -1.1 915,222 - LRK53_RS03900 0.19 -0.4 915,222 - LRK53_RS03900 0.19 -1.0 915,222 - LRK53_RS03900 0.19 -0.2 915,222 - LRK53_RS03900 0.19 +0.3 915,299 + LRK53_RS03900 0.24 +1.7 915,300 - LRK53_RS03900 0.24 -1.9 915,300 - LRK53_RS03900 0.24 -0.5 915,300 - LRK53_RS03900 0.24 +2.1 915,320 + LRK53_RS03900 0.25 -0.7 915,320 + LRK53_RS03900 0.25 -2.0 915,320 + LRK53_RS03900 0.25 +0.4 915,320 + LRK53_RS03900 0.25 -0.4 915,320 + LRK53_RS03900 0.25 -1.2 915,321 - LRK53_RS03900 0.25 -1.0 915,321 - LRK53_RS03900 0.25 -0.5 915,321 - LRK53_RS03900 0.25 -0.9 915,321 - LRK53_RS03900 0.25 -0.6 915,321 - LRK53_RS03900 0.25 -3.0 915,321 - LRK53_RS03900 0.25 -1.7 915,321 - LRK53_RS03900 0.25 -0.6 915,321 - LRK53_RS03900 0.25 -1.4 915,321 - LRK53_RS03900 0.25 -1.1 915,321 - LRK53_RS03900 0.25 -1.0 915,321 - LRK53_RS03900 0.25 -0.6 915,385 - LRK53_RS03900 0.29 -0.8 915,452 + LRK53_RS03900 0.33 +0.8 915,452 + LRK53_RS03900 0.33 -2.0 915,453 - LRK53_RS03900 0.33 -2.3 915,536 + LRK53_RS03900 0.38 -0.6 915,536 + LRK53_RS03900 0.38 -0.2 915,536 + LRK53_RS03900 0.38 -0.0 915,536 + LRK53_RS03900 0.38 +0.1 915,536 + LRK53_RS03900 0.38 -0.6 915,536 + LRK53_RS03900 0.38 -1.5 915,536 + LRK53_RS03900 0.38 -0.4 915,536 + LRK53_RS03900 0.38 -3.0 915,536 + LRK53_RS03900 0.38 +1.4 915,536 + LRK53_RS03900 0.38 +1.1 915,536 + LRK53_RS03900 0.38 -0.1 915,536 + LRK53_RS03900 0.38 -0.4 915,536 + LRK53_RS03900 0.38 -0.2 915,536 + LRK53_RS03900 0.38 -1.0 915,537 - LRK53_RS03900 0.39 +1.0 915,537 - LRK53_RS03900 0.39 +0.6 915,537 - LRK53_RS03900 0.39 -2.2 915,537 - LRK53_RS03900 0.39 +0.7 915,537 - LRK53_RS03900 0.39 -0.4 915,537 - LRK53_RS03900 0.39 +1.2 915,538 + LRK53_RS03900 0.39 -1.0 915,538 + LRK53_RS03900 0.39 -0.0 915,539 - LRK53_RS03900 0.39 -0.9 915,539 - LRK53_RS03900 0.39 -2.0 915,539 - LRK53_RS03900 0.39 +0.6 915,539 - LRK53_RS03900 0.39 -0.0 915,539 - LRK53_RS03900 0.39 -2.2 915,539 - LRK53_RS03900 0.39 -2.9 915,539 - LRK53_RS03900 0.39 -0.6 915,575 + LRK53_RS03900 0.41 -1.9 915,576 - LRK53_RS03900 0.41 -1.2 915,576 - LRK53_RS03900 0.41 -1.4 915,576 - LRK53_RS03900 0.41 -0.7 915,576 - LRK53_RS03900 0.41 -0.0 915,576 - LRK53_RS03900 0.41 -1.6 915,720 + LRK53_RS03900 0.50 -0.7 915,916 + LRK53_RS03900 0.62 +0.5 915,950 + LRK53_RS03900 0.64 -1.4 915,950 + LRK53_RS03900 0.64 +0.4 915,951 - LRK53_RS03900 0.64 -1.1 915,951 - LRK53_RS03900 0.64 -1.7 916,056 + LRK53_RS03900 0.70 +1.0 916,286 + LRK53_RS03900 0.84 -0.4 916,286 + LRK53_RS03900 0.84 +0.3 916,286 + LRK53_RS03900 0.84 -0.2 916,286 + LRK53_RS03900 0.84 +0.3 916,286 + LRK53_RS03900 0.84 -0.4 916,286 + LRK53_RS03900 0.84 -0.4 916,287 - LRK53_RS03900 0.84 -1.6 916,287 - LRK53_RS03900 0.84 -0.7 916,287 - LRK53_RS03900 0.84 -0.4 916,287 - LRK53_RS03900 0.84 -1.0 916,287 - LRK53_RS03900 0.84 +0.6 916,287 - LRK53_RS03900 0.84 -0.4 916,287 - LRK53_RS03900 0.84 -0.2 916,287 - LRK53_RS03900 0.84 -0.7 916,287 - LRK53_RS03900 0.84 -0.6 916,287 - LRK53_RS03900 0.84 +2.8 916,287 - LRK53_RS03900 0.84 -0.2 916,376 + -2.0 916,377 - -1.6 916,434 - +0.7 916,585 + -1.5 916,585 + -0.7 916,585 + -2.6 916,585 + -0.6 916,586 - -1.0 916,586 - +0.3 916,760 + LRK53_RS03905 0.26 +0.9 916,760 + LRK53_RS03905 0.26 -1.1 916,760 + LRK53_RS03905 0.26 -0.7 916,761 - LRK53_RS03905 0.27 +1.9 916,761 - LRK53_RS03905 0.27 -0.6 916,761 - LRK53_RS03905 0.27 +0.1 916,761 - LRK53_RS03905 0.27 -0.6 917,135 + LRK53_RS03910 0.12 +0.1 917,186 + LRK53_RS03910 0.22 -2.1 917,186 + LRK53_RS03910 0.22 +0.6 917,186 + LRK53_RS03910 0.22 +1.5 917,186 + LRK53_RS03910 0.22 -2.2 917,187 - LRK53_RS03910 0.22 -1.1 917,187 - LRK53_RS03910 0.22 -0.9 917,187 - LRK53_RS03910 0.22 +0.9 917,285 + LRK53_RS03910 0.42 -3.3 917,285 + LRK53_RS03910 0.42 -1.5 917,285 + LRK53_RS03910 0.42 +2.4 917,286 - LRK53_RS03910 0.42 +0.1 917,286 - LRK53_RS03910 0.42 +0.2 917,312 + LRK53_RS03910 0.47 -1.2 917,312 + LRK53_RS03910 0.47 -1.0 917,312 + LRK53_RS03910 0.47 -0.3 917,312 + LRK53_RS03910 0.47 -1.4 917,312 + LRK53_RS03910 0.47 -1.0 917,312 + LRK53_RS03910 0.47 -0.1 917,312 + LRK53_RS03910 0.47 -0.4 917,312 + LRK53_RS03910 0.47 +0.1 917,312 + LRK53_RS03910 0.47 -1.7 917,313 - LRK53_RS03910 0.47 -1.3 917,313 - LRK53_RS03910 0.47 -0.5 917,313 - LRK53_RS03910 0.47 -0.8 917,313 - LRK53_RS03910 0.47 -2.4 917,313 - LRK53_RS03910 0.47 +1.1 917,313 - LRK53_RS03910 0.47 -0.4 917,313 - LRK53_RS03910 0.47 -1.6 917,313 - LRK53_RS03910 0.47 -2.3 917,313 - LRK53_RS03910 0.47 -0.8
Or see this region's nucleotide sequence