Experiment: Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03605 and LRK53_RS03610 are separated by 16 nucleotides LRK53_RS03610 and LRK53_RS03615 are separated by 3 nucleotides
LRK53_RS03605: LRK53_RS03605 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 851,150 to 851,977
_RS03605
LRK53_RS03610: LRK53_RS03610 - hypothetical protein, at 851,994 to 852,485
_RS03610
LRK53_RS03615: LRK53_RS03615 - GldG family protein, at 852,489 to 853,844
_RS03615
Position (kb) 851
852
853 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.084 kb on + strand at 851.084 kb on + strand at 851.084 kb on + strand at 851.085 kb on - strand at 851.103 kb on - strand at 851.250 kb on + strand, within LRK53_RS03605 at 851.250 kb on + strand, within LRK53_RS03605 at 851.250 kb on + strand, within LRK53_RS03605 at 851.251 kb on - strand, within LRK53_RS03605 at 851.274 kb on + strand, within LRK53_RS03605 at 851.274 kb on + strand, within LRK53_RS03605 at 851.275 kb on - strand, within LRK53_RS03605 at 851.377 kb on - strand, within LRK53_RS03605 at 851.448 kb on + strand, within LRK53_RS03605 at 851.448 kb on + strand, within LRK53_RS03605 at 851.448 kb on + strand, within LRK53_RS03605 at 851.448 kb on + strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.928 kb on + strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 851.929 kb on - strand at 852.037 kb on + strand at 852.038 kb on - strand at 852.038 kb on - strand at 852.038 kb on - strand at 852.038 kb on - strand at 852.038 kb on - strand at 852.048 kb on + strand, within LRK53_RS03610 at 852.049 kb on - strand, within LRK53_RS03610 at 852.049 kb on - strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.079 kb on + strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.080 kb on - strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 852.307 kb on + strand, within LRK53_RS03610 at 853.015 kb on + strand, within LRK53_RS03615 at 853.186 kb on + strand, within LRK53_RS03615 at 853.186 kb on + strand, within LRK53_RS03615 at 853.186 kb on + strand, within LRK53_RS03615 at 853.186 kb on + strand, within LRK53_RS03615 at 853.187 kb on - strand, within LRK53_RS03615 at 853.187 kb on - strand, within LRK53_RS03615 at 853.187 kb on - strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.248 kb on + strand, within LRK53_RS03615 at 853.249 kb on - strand, within LRK53_RS03615
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM remove 851,057 + -0.8 851,057 + +0.6 851,057 + -1.3 851,057 + -0.4 851,057 + +0.3 851,057 + -0.4 851,057 + +0.8 851,058 - -0.2 851,058 - -2.0 851,058 - -0.1 851,058 - +0.5 851,058 - -0.4 851,058 - +0.2 851,058 - -1.3 851,058 - +1.0 851,058 - +0.9 851,062 + -0.1 851,062 + +1.4 851,062 + +1.3 851,062 + -1.6 851,062 + +0.3 851,062 + +0.1 851,062 + -0.8 851,062 + +1.6 851,062 + -0.7 851,062 + -0.9 851,062 + -0.2 851,062 + -1.8 851,062 + -0.4 851,062 + +0.2 851,062 + -1.4 851,062 + +0.5 851,062 + -0.3 851,062 + -2.4 851,063 - +0.7 851,063 - -0.1 851,063 - -0.9 851,063 - -0.7 851,063 - +0.4 851,063 - -0.4 851,063 - -0.8 851,063 - -0.3 851,063 - -0.4 851,063 - -0.6 851,063 - -0.8 851,084 + -0.6 851,084 + -1.8 851,084 + -1.3 851,085 - -0.4 851,103 - +2.0 851,250 + LRK53_RS03605 0.12 -0.6 851,250 + LRK53_RS03605 0.12 -0.1 851,250 + LRK53_RS03605 0.12 -1.3 851,251 - LRK53_RS03605 0.12 -1.6 851,274 + LRK53_RS03605 0.15 -1.7 851,274 + LRK53_RS03605 0.15 -1.8 851,275 - LRK53_RS03605 0.15 -1.5 851,377 - LRK53_RS03605 0.27 -1.6 851,448 + LRK53_RS03605 0.36 -0.6 851,448 + LRK53_RS03605 0.36 -1.1 851,448 + LRK53_RS03605 0.36 -1.8 851,448 + LRK53_RS03605 0.36 +0.3 851,449 - LRK53_RS03605 0.36 -1.4 851,449 - LRK53_RS03605 0.36 -0.7 851,449 - LRK53_RS03605 0.36 +1.3 851,449 - LRK53_RS03605 0.36 -1.2 851,449 - LRK53_RS03605 0.36 -0.2 851,802 + LRK53_RS03605 0.79 +2.8 851,802 + LRK53_RS03605 0.79 -2.6 851,802 + LRK53_RS03605 0.79 -1.0 851,802 + LRK53_RS03605 0.79 -1.2 851,802 + LRK53_RS03605 0.79 -2.0 851,802 + LRK53_RS03605 0.79 -0.2 851,802 + LRK53_RS03605 0.79 +1.0 851,802 + LRK53_RS03605 0.79 -0.4 851,802 + LRK53_RS03605 0.79 -1.7 851,802 + LRK53_RS03605 0.79 -1.6 851,802 + LRK53_RS03605 0.79 -1.4 851,803 - LRK53_RS03605 0.79 -0.4 851,803 - LRK53_RS03605 0.79 -0.7 851,803 - LRK53_RS03605 0.79 +1.1 851,803 - LRK53_RS03605 0.79 +0.2 851,803 - LRK53_RS03605 0.79 -0.9 851,803 - LRK53_RS03605 0.79 -0.2 851,803 - LRK53_RS03605 0.79 -2.5 851,803 - LRK53_RS03605 0.79 -1.1 851,928 + -1.3 851,928 + -0.6 851,928 + -1.5 851,928 + -0.3 851,928 + -0.7 851,928 + -0.1 851,928 + +1.5 851,929 - -0.7 851,929 - -0.7 851,929 - +0.1 851,929 - -0.4 851,929 - -0.2 851,929 - -0.5 851,929 - -0.6 852,037 + +0.0 852,038 - +0.3 852,038 - -2.1 852,038 - -1.1 852,038 - -1.0 852,038 - -0.2 852,048 + LRK53_RS03610 0.11 -2.5 852,049 - LRK53_RS03610 0.11 -1.7 852,049 - LRK53_RS03610 0.11 -0.9 852,079 + LRK53_RS03610 0.17 +0.3 852,079 + LRK53_RS03610 0.17 -0.2 852,079 + LRK53_RS03610 0.17 -0.6 852,079 + LRK53_RS03610 0.17 +1.6 852,079 + LRK53_RS03610 0.17 -0.2 852,080 - LRK53_RS03610 0.17 -0.3 852,080 - LRK53_RS03610 0.17 -0.7 852,080 - LRK53_RS03610 0.17 +0.7 852,080 - LRK53_RS03610 0.17 +0.7 852,080 - LRK53_RS03610 0.17 -1.0 852,307 + LRK53_RS03610 0.64 +0.1 852,307 + LRK53_RS03610 0.64 +0.4 852,307 + LRK53_RS03610 0.64 +0.8 852,307 + LRK53_RS03610 0.64 +0.2 852,307 + LRK53_RS03610 0.64 +1.2 852,307 + LRK53_RS03610 0.64 -0.1 853,015 + LRK53_RS03615 0.39 +1.8 853,186 + LRK53_RS03615 0.51 -1.9 853,186 + LRK53_RS03615 0.51 +1.3 853,186 + LRK53_RS03615 0.51 -1.0 853,186 + LRK53_RS03615 0.51 +1.0 853,187 - LRK53_RS03615 0.51 +0.1 853,187 - LRK53_RS03615 0.51 -1.8 853,187 - LRK53_RS03615 0.51 +0.4 853,248 + LRK53_RS03615 0.56 +0.2 853,248 + LRK53_RS03615 0.56 -2.1 853,248 + LRK53_RS03615 0.56 +0.6 853,248 + LRK53_RS03615 0.56 -2.1 853,248 + LRK53_RS03615 0.56 +0.9 853,248 + LRK53_RS03615 0.56 +0.0 853,249 - LRK53_RS03615 0.56 +0.6
Or see this region's nucleotide sequence