Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03325

Experiment: Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03315 and LRK53_RS03320 are separated by 74 nucleotidesLRK53_RS03320 and LRK53_RS03325 are separated by 42 nucleotidesLRK53_RS03325 and LRK53_RS03330 are separated by 292 nucleotides LRK53_RS03315: LRK53_RS03315 - hypothetical protein, at 783,588 to 784,523 _RS03315 LRK53_RS03320: LRK53_RS03320 - glycerophosphoryl diester phosphodiesterase, at 784,598 to 785,054 _RS03320 LRK53_RS03325: LRK53_RS03325 - hypothetical protein, at 785,097 to 785,504 _RS03325 LRK53_RS03330: LRK53_RS03330 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 785,797 to 786,621 _RS03330 Position (kb) 785 786Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 784.233 kb on + strand, within LRK53_RS03315at 784.234 kb on - strand, within LRK53_RS03315at 784.234 kb on - strand, within LRK53_RS03315at 784.234 kb on - strand, within LRK53_RS03315at 784.251 kb on + strand, within LRK53_RS03315at 784.312 kb on - strand, within LRK53_RS03315at 784.312 kb on - strand, within LRK53_RS03315at 784.405 kb on + strand, within LRK53_RS03315at 784.405 kb on + strand, within LRK53_RS03315at 784.405 kb on + strand, within LRK53_RS03315at 784.406 kb on - strand, within LRK53_RS03315at 784.406 kb on - strand, within LRK53_RS03315at 784.491 kb on + strandat 784.491 kb on + strandat 784.491 kb on + strandat 784.492 kb on - strandat 784.492 kb on - strandat 784.576 kb on + strandat 784.576 kb on + strandat 784.576 kb on + strandat 784.576 kb on + strandat 784.577 kb on - strandat 784.655 kb on + strand, within LRK53_RS03320at 784.655 kb on + strand, within LRK53_RS03320at 784.655 kb on + strand, within LRK53_RS03320at 784.656 kb on - strand, within LRK53_RS03320at 784.656 kb on - strand, within LRK53_RS03320at 784.668 kb on + strand, within LRK53_RS03320at 784.669 kb on - strand, within LRK53_RS03320at 784.701 kb on + strand, within LRK53_RS03320at 784.702 kb on - strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.746 kb on + strand, within LRK53_RS03320at 784.747 kb on - strand, within LRK53_RS03320at 784.747 kb on - strand, within LRK53_RS03320at 784.747 kb on - strand, within LRK53_RS03320at 784.747 kb on - strand, within LRK53_RS03320at 784.747 kb on - strand, within LRK53_RS03320at 784.747 kb on - strand, within LRK53_RS03320at 784.747 kb on - strand, within LRK53_RS03320at 784.867 kb on - strand, within LRK53_RS03320at 784.867 kb on - strand, within LRK53_RS03320at 784.895 kb on - strand, within LRK53_RS03320at 784.968 kb on + strand, within LRK53_RS03320at 784.968 kb on + strand, within LRK53_RS03320at 784.968 kb on + strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 785.052 kb on + strandat 785.053 kb on - strandat 785.053 kb on - strandat 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.165 kb on - strand, within LRK53_RS03325at 785.165 kb on - strand, within LRK53_RS03325at 785.165 kb on - strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.339 kb on - strand, within LRK53_RS03325at 785.339 kb on - strand, within LRK53_RS03325at 785.637 kb on + strandat 785.638 kb on - strandat 785.638 kb on - strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.799 kb on - strandat 785.799 kb on - strandat 785.891 kb on + strand, within LRK53_RS03330at 785.892 kb on - strand, within LRK53_RS03330at 786.356 kb on + strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; Manganese (II) chloride tetrahydrate 10mM
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784,233 + LRK53_RS03315 0.69 -0.6
784,234 - LRK53_RS03315 0.69 -1.3
784,234 - LRK53_RS03315 0.69 +0.2
784,234 - LRK53_RS03315 0.69 -0.2
784,251 + LRK53_RS03315 0.71 -1.0
784,312 - LRK53_RS03315 0.77 -1.7
784,312 - LRK53_RS03315 0.77 +0.0
784,405 + LRK53_RS03315 0.87 -2.1
784,405 + LRK53_RS03315 0.87 -0.4
784,405 + LRK53_RS03315 0.87 -1.5
784,406 - LRK53_RS03315 0.87 +0.1
784,406 - LRK53_RS03315 0.87 -1.4
784,491 + -1.2
784,491 + -1.1
784,491 + -1.3
784,492 - +0.1
784,492 - -0.2
784,576 + -1.2
784,576 + +0.8
784,576 + -0.5
784,576 + -0.4
784,577 - +0.1
784,655 + LRK53_RS03320 0.12 -1.6
784,655 + LRK53_RS03320 0.12 -2.1
784,655 + LRK53_RS03320 0.12 +0.6
784,656 - LRK53_RS03320 0.13 -1.1
784,656 - LRK53_RS03320 0.13 -1.4
784,668 + LRK53_RS03320 0.15 +0.1
784,669 - LRK53_RS03320 0.16 -0.6
784,701 + LRK53_RS03320 0.23 -1.6
784,702 - LRK53_RS03320 0.23 +0.0
784,746 + LRK53_RS03320 0.32 +0.9
784,746 + LRK53_RS03320 0.32 -1.6
784,746 + LRK53_RS03320 0.32 +0.1
784,746 + LRK53_RS03320 0.32 -1.7
784,746 + LRK53_RS03320 0.32 -0.2
784,746 + LRK53_RS03320 0.32 -0.1
784,746 + LRK53_RS03320 0.32 -1.3
784,746 + LRK53_RS03320 0.32 +0.0
784,746 + LRK53_RS03320 0.32 -0.7
784,746 + LRK53_RS03320 0.32 -0.9
784,746 + LRK53_RS03320 0.32 -0.5
784,746 + LRK53_RS03320 0.32 -1.5
784,746 + LRK53_RS03320 0.32 -1.2
784,746 + LRK53_RS03320 0.32 +0.3
784,747 - LRK53_RS03320 0.33 -2.1
784,747 - LRK53_RS03320 0.33 +0.8
784,747 - LRK53_RS03320 0.33 +0.7
784,747 - LRK53_RS03320 0.33 -1.5
784,747 - LRK53_RS03320 0.33 -0.5
784,747 - LRK53_RS03320 0.33 -1.4
784,747 - LRK53_RS03320 0.33 +2.3
784,867 - LRK53_RS03320 0.59 -1.0
784,867 - LRK53_RS03320 0.59 -1.0
784,895 - LRK53_RS03320 0.65 -0.2
784,968 + LRK53_RS03320 0.81 -2.0
784,968 + LRK53_RS03320 0.81 +0.1
784,968 + LRK53_RS03320 0.81 -1.2
784,969 - LRK53_RS03320 0.81 -0.5
784,969 - LRK53_RS03320 0.81 -0.3
784,969 - LRK53_RS03320 0.81 -2.9
784,969 - LRK53_RS03320 0.81 +2.8
784,969 - LRK53_RS03320 0.81 -1.2
784,969 - LRK53_RS03320 0.81 +0.1
784,969 - LRK53_RS03320 0.81 -0.2
785,052 + -1.1
785,053 - +0.9
785,053 - +0.9
785,164 + LRK53_RS03325 0.16 +1.1
785,164 + LRK53_RS03325 0.16 -0.9
785,164 + LRK53_RS03325 0.16 -2.6
785,164 + LRK53_RS03325 0.16 -0.6
785,164 + LRK53_RS03325 0.16 -0.7
785,164 + LRK53_RS03325 0.16 -1.6
785,164 + LRK53_RS03325 0.16 -1.2
785,164 + LRK53_RS03325 0.16 -2.7
785,164 + LRK53_RS03325 0.16 -1.4
785,164 + LRK53_RS03325 0.16 -0.6
785,164 + LRK53_RS03325 0.16 +0.2
785,164 + LRK53_RS03325 0.16 -0.8
785,164 + LRK53_RS03325 0.16 -1.5
785,165 - LRK53_RS03325 0.17 -2.2
785,165 - LRK53_RS03325 0.17 -2.0
785,165 - LRK53_RS03325 0.17 -0.2
785,278 + LRK53_RS03325 0.44 -2.1
785,278 + LRK53_RS03325 0.44 -3.4
785,278 + LRK53_RS03325 0.44 -2.8
785,278 + LRK53_RS03325 0.44 -1.1
785,278 + LRK53_RS03325 0.44 -0.1
785,278 + LRK53_RS03325 0.44 +1.1
785,278 + LRK53_RS03325 0.44 -2.6
785,278 + LRK53_RS03325 0.44 -0.6
785,278 + LRK53_RS03325 0.44 -0.6
785,278 + LRK53_RS03325 0.44 +1.3
785,278 + LRK53_RS03325 0.44 +0.3
785,279 - LRK53_RS03325 0.45 +0.0
785,279 - LRK53_RS03325 0.45 +0.3
785,279 - LRK53_RS03325 0.45 -0.6
785,279 - LRK53_RS03325 0.45 +0.0
785,279 - LRK53_RS03325 0.45 -0.5
785,279 - LRK53_RS03325 0.45 -2.2
785,279 - LRK53_RS03325 0.45 -0.0
785,279 - LRK53_RS03325 0.45 -0.3
785,279 - LRK53_RS03325 0.45 -0.6
785,279 - LRK53_RS03325 0.45 -0.4
785,279 - LRK53_RS03325 0.45 -1.1
785,279 - LRK53_RS03325 0.45 -1.6
785,339 - LRK53_RS03325 0.59 -1.1
785,339 - LRK53_RS03325 0.59 -0.1
785,637 + +0.0
785,638 - -0.2
785,638 - -0.9
785,652 + -0.0
785,652 + -1.7
785,652 + -0.6
785,652 + -1.4
785,652 + -0.7
785,652 + -0.9
785,652 + +1.8
785,652 + +0.7
785,652 + +0.2
785,652 + -0.1
785,652 + -0.4
785,652 + -2.1
785,652 + +0.8
785,652 + -0.6
785,653 - -0.8
785,653 - -0.8
785,653 - -1.1
785,653 - +2.6
785,653 - -1.7
785,653 - +0.1
785,653 - -1.9
785,653 - +1.9
785,653 - +0.8
785,653 - -1.6
785,799 - -0.2
785,799 - +0.4
785,891 + LRK53_RS03330 0.11 -0.6
785,892 - LRK53_RS03330 0.12 -0.8
786,356 + LRK53_RS03330 0.68 -0.4
786,357 - LRK53_RS03330 0.68 -2.1
786,357 - LRK53_RS03330 0.68 -0.7
786,357 - LRK53_RS03330 0.68 +1.4

Or see this region's nucleotide sequence