Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02530

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02525 and HUW76_02530 are separated by 2 nucleotidesHUW76_02530 and HUW76_02535 are separated by 15 nucleotides HUW76_02525: HUW76_02525 - CoA transferase subunit A, at 513,738 to 514,703 _02525 HUW76_02530: HUW76_02530 - CoA-transferase subunit beta, at 514,706 to 515,509 _02530 HUW76_02535: HUW76_02535 - glutaconyl-CoA decarboxylase subunit alpha, at 515,525 to 517,279 _02535 Position (kb) 514 515 516Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 513.707 kb on - strandat 513.953 kb on + strand, within HUW76_02525at 514.333 kb on + strand, within HUW76_02525at 514.341 kb on - strand, within HUW76_02525at 515.054 kb on + strand, within HUW76_02530at 515.088 kb on - strand, within HUW76_02530at 515.474 kb on + strandat 515.480 kb on + strandat 515.504 kb on + strandat 515.504 kb on + strandat 515.504 kb on + strandat 515.662 kb on - strandat 516.198 kb on - strand, within HUW76_02535

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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513,707 - +1.9
513,953 + HUW76_02525 0.22 +0.9
514,333 + HUW76_02525 0.62 +1.9
514,341 - HUW76_02525 0.62 +1.9
515,054 + HUW76_02530 0.43 +0.3
515,088 - HUW76_02530 0.48 -0.5
515,474 + +1.9
515,480 + +1.9
515,504 + +1.5
515,504 + -4.3
515,504 + -0.6
515,662 - +0.3
516,198 - HUW76_02535 0.38 +1.9

Or see this region's nucleotide sequence