Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02065

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02055 and HUW76_02060 are separated by 355 nucleotidesHUW76_02060 and HUW76_02065 are separated by 9 nucleotidesHUW76_02065 and HUW76_02070 are separated by 210 nucleotidesHUW76_02070 and HUW76_02075 are separated by 29 nucleotides HUW76_02055: HUW76_02055 - PocR ligand-binding domain-containing protein, at 406,661 to 407,458 _02055 HUW76_02060: HUW76_02060 - DUF116 domain-containing protein, at 407,814 to 408,344 _02060 HUW76_02065: HUW76_02065 - tetratricopeptide repeat protein, at 408,354 to 411,164 _02065 HUW76_02070: HUW76_02070 - hypothetical protein, at 411,375 to 411,752 _02070 HUW76_02075: HUW76_02075 - MotA/TolQ/ExbB proton channel family protein, at 411,782 to 412,393 _02075 Position (kb) 408 409 410 411 412Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 407.460 kb on - strandat 407.460 kb on - strandat 407.464 kb on - strandat 407.464 kb on - strandat 407.466 kb on + strandat 407.466 kb on + strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.645 kb on + strandat 407.658 kb on + strandat 407.666 kb on + strandat 407.666 kb on + strandat 407.726 kb on + strandat 407.726 kb on + strandat 407.727 kb on + strandat 407.735 kb on - strandat 407.807 kb on + strandat 407.807 kb on + strandat 408.034 kb on + strand, within HUW76_02060at 408.077 kb on + strand, within HUW76_02060at 408.168 kb on + strand, within HUW76_02060at 408.278 kb on + strand, within HUW76_02060at 408.289 kb on + strand, within HUW76_02060at 408.422 kb on + strandat 408.422 kb on + strandat 408.422 kb on + strandat 408.432 kb on + strandat 408.432 kb on + strandat 408.432 kb on + strandat 408.467 kb on + strandat 408.467 kb on + strandat 408.468 kb on + strandat 408.468 kb on + strandat 408.468 kb on + strandat 408.516 kb on + strandat 408.516 kb on + strandat 408.516 kb on + strandat 408.516 kb on + strandat 408.660 kb on + strand, within HUW76_02065at 408.669 kb on + strand, within HUW76_02065at 408.669 kb on + strand, within HUW76_02065at 408.683 kb on + strand, within HUW76_02065at 408.853 kb on + strand, within HUW76_02065at 408.853 kb on + strand, within HUW76_02065at 408.859 kb on + strand, within HUW76_02065at 408.859 kb on + strand, within HUW76_02065at 408.874 kb on + strand, within HUW76_02065at 408.874 kb on + strand, within HUW76_02065at 408.899 kb on + strand, within HUW76_02065at 408.924 kb on + strand, within HUW76_02065at 408.986 kb on + strand, within HUW76_02065at 408.986 kb on + strand, within HUW76_02065at 409.083 kb on + strand, within HUW76_02065at 409.151 kb on + strand, within HUW76_02065at 409.151 kb on + strand, within HUW76_02065at 409.151 kb on + strand, within HUW76_02065at 409.151 kb on + strand, within HUW76_02065at 409.166 kb on + strand, within HUW76_02065at 409.166 kb on + strand, within HUW76_02065at 409.166 kb on + strand, within HUW76_02065at 409.170 kb on + strand, within HUW76_02065at 409.212 kb on + strand, within HUW76_02065at 409.212 kb on + strand, within HUW76_02065at 409.212 kb on + strand, within HUW76_02065at 409.212 kb on + strand, within HUW76_02065at 409.239 kb on + strand, within HUW76_02065at 409.239 kb on + strand, within HUW76_02065at 409.249 kb on + strand, within HUW76_02065at 409.249 kb on + strand, within HUW76_02065at 409.271 kb on + strand, within HUW76_02065at 409.576 kb on + strand, within HUW76_02065at 409.584 kb on + strand, within HUW76_02065at 409.584 kb on + strand, within HUW76_02065at 409.649 kb on + strand, within HUW76_02065at 409.649 kb on + strand, within HUW76_02065at 409.651 kb on + strand, within HUW76_02065at 409.721 kb on + strand, within HUW76_02065at 409.721 kb on + strand, within HUW76_02065at 409.857 kb on + strand, within HUW76_02065at 409.857 kb on + strand, within HUW76_02065at 409.857 kb on + strand, within HUW76_02065at 409.857 kb on + strand, within HUW76_02065at 409.883 kb on + strand, within HUW76_02065at 409.884 kb on + strand, within HUW76_02065at 409.885 kb on + strand, within HUW76_02065at 409.894 kb on + strand, within HUW76_02065at 409.894 kb on + strand, within HUW76_02065at 409.941 kb on + strand, within HUW76_02065at 409.946 kb on + strand, within HUW76_02065at 409.946 kb on + strand, within HUW76_02065at 409.961 kb on + strand, within HUW76_02065at 410.017 kb on + strand, within HUW76_02065at 410.017 kb on + strand, within HUW76_02065at 410.017 kb on + strand, within HUW76_02065at 410.017 kb on + strand, within HUW76_02065at 410.082 kb on + strand, within HUW76_02065at 410.177 kb on + strand, within HUW76_02065at 410.178 kb on + strand, within HUW76_02065at 410.185 kb on + strand, within HUW76_02065at 410.185 kb on + strand, within HUW76_02065at 410.185 kb on + strand, within HUW76_02065at 410.185 kb on + strand, within HUW76_02065at 410.185 kb on + strand, within HUW76_02065at 410.192 kb on + strand, within HUW76_02065at 410.192 kb on + strand, within HUW76_02065at 410.192 kb on + strand, within HUW76_02065at 410.192 kb on + strand, within HUW76_02065at 410.351 kb on + strand, within HUW76_02065at 410.351 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.423 kb on + strand, within HUW76_02065at 410.441 kb on + strand, within HUW76_02065at 410.530 kb on + strand, within HUW76_02065at 410.615 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.652 kb on + strand, within HUW76_02065at 410.652 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.714 kb on + strand, within HUW76_02065at 410.714 kb on + strand, within HUW76_02065at 410.714 kb on + strand, within HUW76_02065at 410.765 kb on + strand, within HUW76_02065at 410.771 kb on + strand, within HUW76_02065at 410.771 kb on + strand, within HUW76_02065at 410.783 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.841 kb on + strand, within HUW76_02065at 410.841 kb on + strand, within HUW76_02065at 410.877 kb on + strand, within HUW76_02065at 410.888 kb on + strandat 410.888 kb on + strandat 410.888 kb on + strandat 410.888 kb on + strandat 410.888 kb on + strandat 410.888 kb on + strandat 411.035 kb on + strandat 411.106 kb on + strandat 411.292 kb on + strandat 411.292 kb on + strandat 411.318 kb on + strandat 411.412 kb on + strandat 411.432 kb on + strand, within HUW76_02070at 411.432 kb on + strand, within HUW76_02070at 411.433 kb on + strand, within HUW76_02070at 411.493 kb on + strand, within HUW76_02070at 411.493 kb on + strand, within HUW76_02070at 411.496 kb on + strand, within HUW76_02070at 411.496 kb on + strand, within HUW76_02070at 411.503 kb on + strand, within HUW76_02070at 411.596 kb on + strand, within HUW76_02070at 411.596 kb on + strand, within HUW76_02070at 412.150 kb on + strand, within HUW76_02075at 412.159 kb on + strand, within HUW76_02075at 412.159 kb on + strand, within HUW76_02075

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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407,460 - +0.9
407,460 - +1.8
407,464 - -0.1
407,464 - -1.4
407,466 + -3.0
407,466 + -2.8
407,572 - +3.1
407,572 - +0.4
407,572 - -1.7
407,572 - +0.4
407,572 - +1.4
407,572 - -1.9
407,572 - -1.3
407,645 + -1.5
407,658 + -2.5
407,666 + -2.9
407,666 + -4.7
407,726 + -2.9
407,726 + +1.1
407,727 + +0.3
407,735 - -0.6
407,807 + +1.2
407,807 + -4.5
408,034 + HUW76_02060 0.41 +0.9
408,077 + HUW76_02060 0.50 -1.5
408,168 + HUW76_02060 0.67 -2.2
408,278 + HUW76_02060 0.87 -0.9
408,289 + HUW76_02060 0.89 +1.2
408,422 + -0.0
408,422 + -0.6
408,422 + +0.5
408,432 + -5.2
408,432 + +0.8
408,432 + +0.7
408,467 + -1.3
408,467 + +0.5
408,468 + -1.7
408,468 + +3.9
408,468 + -1.8
408,516 + -1.1
408,516 + -1.5
408,516 + -0.3
408,516 + -2.6
408,660 + HUW76_02065 0.11 +1.0
408,669 + HUW76_02065 0.11 +0.3
408,669 + HUW76_02065 0.11 +1.4
408,683 + HUW76_02065 0.12 +1.5
408,853 + HUW76_02065 0.18 +2.9
408,853 + HUW76_02065 0.18 -2.7
408,859 + HUW76_02065 0.18 -3.0
408,859 + HUW76_02065 0.18 -2.8
408,874 + HUW76_02065 0.18 +0.3
408,874 + HUW76_02065 0.18 -0.1
408,899 + HUW76_02065 0.19 -3.6
408,924 + HUW76_02065 0.20 +1.0
408,986 + HUW76_02065 0.22 -0.7
408,986 + HUW76_02065 0.22 -0.2
409,083 + HUW76_02065 0.26 -0.1
409,151 + HUW76_02065 0.28 -0.9
409,151 + HUW76_02065 0.28 +0.4
409,151 + HUW76_02065 0.28 -0.4
409,151 + HUW76_02065 0.28 -3.4
409,166 + HUW76_02065 0.29 -2.2
409,166 + HUW76_02065 0.29 +1.1
409,166 + HUW76_02065 0.29 -2.2
409,170 + HUW76_02065 0.29 -4.3
409,212 + HUW76_02065 0.31 -1.4
409,212 + HUW76_02065 0.31 -5.2
409,212 + HUW76_02065 0.31 -1.2
409,212 + HUW76_02065 0.31 -0.4
409,239 + HUW76_02065 0.31 -0.2
409,239 + HUW76_02065 0.31 -3.1
409,249 + HUW76_02065 0.32 -1.1
409,249 + HUW76_02065 0.32 -3.2
409,271 + HUW76_02065 0.33 -4.0
409,576 + HUW76_02065 0.43 +0.0
409,584 + HUW76_02065 0.44 +1.9
409,584 + HUW76_02065 0.44 +0.8
409,649 + HUW76_02065 0.46 +0.3
409,649 + HUW76_02065 0.46 -0.9
409,651 + HUW76_02065 0.46 -0.3
409,721 + HUW76_02065 0.49 -4.9
409,721 + HUW76_02065 0.49 -1.0
409,857 + HUW76_02065 0.53 +1.9
409,857 + HUW76_02065 0.53 -4.8
409,857 + HUW76_02065 0.53 +1.2
409,857 + HUW76_02065 0.53 +0.7
409,883 + HUW76_02065 0.54 -4.9
409,884 + HUW76_02065 0.54 +0.0
409,885 + HUW76_02065 0.54 +0.7
409,894 + HUW76_02065 0.55 -0.1
409,894 + HUW76_02065 0.55 +0.9
409,941 + HUW76_02065 0.56 +0.9
409,946 + HUW76_02065 0.57 -4.4
409,946 + HUW76_02065 0.57 +1.5
409,961 + HUW76_02065 0.57 -0.1
410,017 + HUW76_02065 0.59 +0.6
410,017 + HUW76_02065 0.59 -5.2
410,017 + HUW76_02065 0.59 +0.2
410,017 + HUW76_02065 0.59 -1.7
410,082 + HUW76_02065 0.61 +0.2
410,177 + HUW76_02065 0.65 +0.0
410,178 + HUW76_02065 0.65 -0.1
410,185 + HUW76_02065 0.65 +0.4
410,185 + HUW76_02065 0.65 -1.5
410,185 + HUW76_02065 0.65 +0.2
410,185 + HUW76_02065 0.65 -0.9
410,185 + HUW76_02065 0.65 -0.6
410,192 + HUW76_02065 0.65 -4.3
410,192 + HUW76_02065 0.65 -0.1
410,192 + HUW76_02065 0.65 +2.5
410,192 + HUW76_02065 0.65 -1.2
410,351 + HUW76_02065 0.71 -1.9
410,351 + HUW76_02065 0.71 -4.0
410,390 + HUW76_02065 0.72 -1.2
410,390 + HUW76_02065 0.72 -0.7
410,390 + HUW76_02065 0.72 -4.5
410,390 + HUW76_02065 0.72 +2.1
410,390 + HUW76_02065 0.72 +1.9
410,390 + HUW76_02065 0.72 +0.8
410,423 + HUW76_02065 0.74 +1.2
410,441 + HUW76_02065 0.74 +2.1
410,530 + HUW76_02065 0.77 +0.9
410,615 + HUW76_02065 0.80 -0.7
410,642 + HUW76_02065 0.81 -2.4
410,642 + HUW76_02065 0.81 -1.1
410,642 + HUW76_02065 0.81 -0.6
410,642 + HUW76_02065 0.81 -4.1
410,642 + HUW76_02065 0.81 +1.3
410,642 + HUW76_02065 0.81 +1.4
410,642 + HUW76_02065 0.81 +1.5
410,652 + HUW76_02065 0.82 +1.8
410,652 + HUW76_02065 0.82 +1.4
410,708 + HUW76_02065 0.84 -3.6
410,708 + HUW76_02065 0.84 -0.4
410,708 + HUW76_02065 0.84 -0.3
410,708 + HUW76_02065 0.84 -0.3
410,708 + HUW76_02065 0.84 +0.9
410,708 + HUW76_02065 0.84 -0.3
410,714 + HUW76_02065 0.84 -3.9
410,714 + HUW76_02065 0.84 -2.4
410,714 + HUW76_02065 0.84 -2.6
410,765 + HUW76_02065 0.86 +0.1
410,771 + HUW76_02065 0.86 +0.5
410,771 + HUW76_02065 0.86 -0.4
410,783 + HUW76_02065 0.86 -3.5
410,836 + HUW76_02065 0.88 -4.3
410,836 + HUW76_02065 0.88 -0.8
410,836 + HUW76_02065 0.88 -2.6
410,836 + HUW76_02065 0.88 +0.9
410,836 + HUW76_02065 0.88 +0.9
410,836 + HUW76_02065 0.88 -0.5
410,836 + HUW76_02065 0.88 -0.6
410,841 + HUW76_02065 0.88 -0.7
410,841 + HUW76_02065 0.88 -0.2
410,877 + HUW76_02065 0.90 -3.2
410,888 + +0.9
410,888 + -3.2
410,888 + -3.0
410,888 + -1.7
410,888 + -3.9
410,888 + +0.8
411,035 + -5.1
411,106 + -0.6
411,292 + -0.1
411,292 + -2.8
411,318 + -4.2
411,412 + -4.3
411,432 + HUW76_02070 0.15 +1.3
411,432 + HUW76_02070 0.15 +1.3
411,433 + HUW76_02070 0.15 -1.0
411,493 + HUW76_02070 0.31 -3.8
411,493 + HUW76_02070 0.31 +0.2
411,496 + HUW76_02070 0.32 +1.1
411,496 + HUW76_02070 0.32 -0.4
411,503 + HUW76_02070 0.34 +0.2
411,596 + HUW76_02070 0.58 -2.0
411,596 + HUW76_02070 0.58 -0.0
412,150 + HUW76_02075 0.60 -0.7
412,159 + HUW76_02075 0.62 +0.6
412,159 + HUW76_02075 0.62 -4.9

Or see this region's nucleotide sequence