Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yncB and NIAGMN_28730 are separated by 201 nucleotides NIAGMN_28730 and finO are separated by 136 nucleotides finO and dAP2 are separated by 102 nucleotides
NIAGMN_28720: yncB - Uncharacterized endonuclease, at 48,040 to 48,501
yncB
NIAGMN_28730: NIAGMN_28730 - hypothetical protein, at 48,703 to 48,954
_28730
NIAGMN_28735: finO - Fertility inhibition protein, at 49,091 to 49,651
finO
NIAGMN_28740: dAP2 - Uncharacterized protein in traX-finO intergenic region, at 49,754 to 50,614
dAP2
Position (kb) 49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 48.152 kb on + strand, within yncB at 48.153 kb on - strand, within yncB at 48.161 kb on + strand, within yncB at 48.161 kb on + strand, within yncB at 48.162 kb on - strand, within yncB at 48.163 kb on + strand, within yncB at 48.164 kb on - strand, within yncB at 48.164 kb on - strand, within yncB at 48.190 kb on - strand, within yncB at 48.237 kb on + strand, within yncB at 48.238 kb on - strand, within yncB at 48.246 kb on - strand, within yncB at 48.326 kb on + strand, within yncB at 48.355 kb on - strand, within yncB at 48.406 kb on - strand, within yncB at 48.418 kb on + strand, within yncB at 48.660 kb on - strand at 48.678 kb on - strand at 48.701 kb on - strand at 48.989 kb on + strand at 48.990 kb on - strand at 48.990 kb on - strand at 48.997 kb on + strand at 48.998 kb on - strand at 49.001 kb on + strand at 49.002 kb on - strand at 49.002 kb on - strand at 49.038 kb on + strand at 49.049 kb on - strand at 49.056 kb on - strand at 49.170 kb on + strand, within finO at 49.171 kb on - strand, within finO at 49.171 kb on - strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.207 kb on - strand, within finO at 49.207 kb on - strand, within finO at 49.254 kb on + strand, within finO at 49.254 kb on + strand, within finO at 49.254 kb on + strand, within finO at 49.255 kb on - strand, within finO at 49.255 kb on - strand, within finO at 49.255 kb on - strand, within finO at 49.255 kb on - strand, within finO at 49.391 kb on + strand, within finO at 49.392 kb on - strand, within finO at 49.452 kb on + strand, within finO at 49.452 kb on + strand, within finO at 49.452 kb on + strand, within finO at 49.453 kb on - strand, within finO at 49.453 kb on - strand, within finO at 49.655 kb on + strand at 49.655 kb on + strand at 49.656 kb on - strand at 49.739 kb on + strand at 49.740 kb on - strand at 49.745 kb on + strand at 49.746 kb on - strand at 49.756 kb on - strand at 49.761 kb on + strand at 49.761 kb on + strand at 49.791 kb on - strand at 49.791 kb on - strand at 49.793 kb on + strand at 49.794 kb on - strand at 49.818 kb on + strand at 49.818 kb on + strand at 49.818 kb on + strand at 49.819 kb on - strand at 49.819 kb on - strand at 49.822 kb on + strand at 49.823 kb on - strand at 49.823 kb on - strand at 49.823 kb on - strand at 49.827 kb on + strand at 49.828 kb on - strand at 49.828 kb on - strand at 49.828 kb on - strand at 49.828 kb on - strand at 49.853 kb on + strand, within dAP2 at 49.853 kb on + strand, within dAP2 at 49.854 kb on - strand, within dAP2 at 49.862 kb on - strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.885 kb on - strand, within dAP2 at 49.885 kb on - strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.919 kb on - strand, within dAP2 at 49.933 kb on + strand, within dAP2 at 49.934 kb on - strand, within dAP2 at 49.982 kb on - strand, within dAP2 at 49.982 kb on - strand, within dAP2 at 49.982 kb on - strand, within dAP2 at 49.983 kb on + strand, within dAP2 at 49.984 kb on - strand, within dAP2 at 49.984 kb on - strand, within dAP2 at 49.984 kb on - strand, within dAP2 at 50.005 kb on + strand, within dAP2 at 50.016 kb on - strand, within dAP2 at 50.016 kb on - strand, within dAP2 at 50.021 kb on + strand, within dAP2 at 50.022 kb on - strand, within dAP2 at 50.022 kb on - strand, within dAP2 at 50.084 kb on + strand, within dAP2 at 50.084 kb on + strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.088 kb on - strand, within dAP2 at 50.096 kb on - strand, within dAP2 at 50.096 kb on - strand, within dAP2 at 50.096 kb on - strand, within dAP2 at 50.147 kb on - strand, within dAP2 at 50.239 kb on + strand, within dAP2 at 50.239 kb on + strand, within dAP2 at 50.240 kb on - strand, within dAP2 at 50.240 kb on - strand, within dAP2 at 50.247 kb on - strand, within dAP2 at 50.323 kb on + strand, within dAP2 at 50.330 kb on - strand, within dAP2 at 50.330 kb on - strand, within dAP2 at 50.365 kb on + strand, within dAP2 at 50.365 kb on + strand, within dAP2 at 50.365 kb on + strand, within dAP2 at 50.365 kb on + strand, within dAP2 at 50.366 kb on - strand, within dAP2 at 50.366 kb on - strand, within dAP2 at 50.366 kb on - strand, within dAP2 at 50.366 kb on - strand, within dAP2 at 50.525 kb on + strand, within dAP2 at 50.525 kb on + strand, within dAP2 at 50.526 kb on - strand, within dAP2 at 50.526 kb on - strand, within dAP2 at 50.526 kb on - strand, within dAP2 at 50.530 kb on + strand at 50.530 kb on + strand at 50.531 kb on - strand at 50.531 kb on - strand at 50.547 kb on - strand at 50.547 kb on - strand at 50.547 kb on - strand at 50.547 kb on - strand at 50.549 kb on - strand at 50.549 kb on - strand at 50.582 kb on - strand at 50.582 kb on - strand at 50.606 kb on - strand at 50.615 kb on - strand at 50.615 kb on - strand at 50.619 kb on - strand at 50.628 kb on + strand at 50.628 kb on + strand at 50.628 kb on + strand at 50.628 kb on + strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.638 kb on - strand at 50.640 kb on + strand at 50.640 kb on + strand at 50.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 48,152 + yncB NIAGMN_28720 0.24 +2.6 48,153 - yncB NIAGMN_28720 0.24 +0.6 48,161 + yncB NIAGMN_28720 0.26 -0.2 48,161 + yncB NIAGMN_28720 0.26 -0.4 48,162 - yncB NIAGMN_28720 0.26 +1.8 48,163 + yncB NIAGMN_28720 0.27 +2.2 48,164 - yncB NIAGMN_28720 0.27 -1.3 48,164 - yncB NIAGMN_28720 0.27 +1.6 48,190 - yncB NIAGMN_28720 0.32 +1.7 48,237 + yncB NIAGMN_28720 0.43 +0.5 48,238 - yncB NIAGMN_28720 0.43 -2.6 48,246 - yncB NIAGMN_28720 0.45 -1.0 48,326 + yncB NIAGMN_28720 0.62 +1.7 48,355 - yncB NIAGMN_28720 0.68 -0.3 48,406 - yncB NIAGMN_28720 0.79 +1.7 48,418 + yncB NIAGMN_28720 0.82 -0.5 48,660 - -1.9 48,678 - +0.3 48,701 - -0.5 48,989 + -0.8 48,990 - +0.1 48,990 - +0.7 48,997 + +0.2 48,998 - +0.5 49,001 + +0.8 49,002 - -1.0 49,002 - -0.3 49,038 + -0.0 49,049 - +0.6 49,056 - +0.9 49,170 + finO NIAGMN_28735 0.14 +1.1 49,171 - finO NIAGMN_28735 0.14 +3.0 49,171 - finO NIAGMN_28735 0.14 +0.6 49,192 + finO NIAGMN_28735 0.18 +0.2 49,192 + finO NIAGMN_28735 0.18 -0.0 49,192 + finO NIAGMN_28735 0.18 -1.5 49,192 + finO NIAGMN_28735 0.18 +0.2 49,192 + finO NIAGMN_28735 0.18 +1.0 49,193 - finO NIAGMN_28735 0.18 -0.8 49,193 - finO NIAGMN_28735 0.18 -2.3 49,193 - finO NIAGMN_28735 0.18 +2.3 49,193 - finO NIAGMN_28735 0.18 -0.6 49,193 - finO NIAGMN_28735 0.18 +0.5 49,206 + finO NIAGMN_28735 0.20 +1.1 49,206 + finO NIAGMN_28735 0.20 -0.2 49,206 + finO NIAGMN_28735 0.20 +2.7 49,206 + finO NIAGMN_28735 0.20 -0.8 49,206 + finO NIAGMN_28735 0.20 -0.7 49,206 + finO NIAGMN_28735 0.20 -1.3 49,206 + finO NIAGMN_28735 0.20 +0.4 49,207 - finO NIAGMN_28735 0.21 +2.8 49,207 - finO NIAGMN_28735 0.21 -0.4 49,254 + finO NIAGMN_28735 0.29 -0.7 49,254 + finO NIAGMN_28735 0.29 -1.4 49,254 + finO NIAGMN_28735 0.29 +1.7 49,255 - finO NIAGMN_28735 0.29 -0.1 49,255 - finO NIAGMN_28735 0.29 -0.4 49,255 - finO NIAGMN_28735 0.29 -1.9 49,255 - finO NIAGMN_28735 0.29 -1.8 49,391 + finO NIAGMN_28735 0.53 +0.3 49,392 - finO NIAGMN_28735 0.54 -2.5 49,452 + finO NIAGMN_28735 0.64 -2.5 49,452 + finO NIAGMN_28735 0.64 +1.4 49,452 + finO NIAGMN_28735 0.64 -0.5 49,453 - finO NIAGMN_28735 0.65 -1.6 49,453 - finO NIAGMN_28735 0.65 -2.4 49,655 + -0.8 49,655 + -0.8 49,656 - -0.3 49,739 + +0.3 49,740 - -0.2 49,745 + -2.4 49,746 - +0.2 49,756 - +2.0 49,761 + +0.8 49,761 + +2.2 49,791 - -1.0 49,791 - -1.3 49,793 + +0.3 49,794 - +1.1 49,818 + +2.6 49,818 + -0.5 49,818 + +0.3 49,819 - +3.1 49,819 - +0.4 49,822 + -0.7 49,823 - +0.9 49,823 - +0.7 49,823 - +0.2 49,827 + +0.1 49,828 - -0.6 49,828 - +2.6 49,828 - +1.3 49,828 - -0.1 49,853 + dAP2 NIAGMN_28740 0.11 -0.8 49,853 + dAP2 NIAGMN_28740 0.11 -1.1 49,854 - dAP2 NIAGMN_28740 0.12 +1.6 49,862 - dAP2 NIAGMN_28740 0.13 +1.2 49,884 + dAP2 NIAGMN_28740 0.15 +1.3 49,884 + dAP2 NIAGMN_28740 0.15 -1.0 49,884 + dAP2 NIAGMN_28740 0.15 +2.3 49,884 + dAP2 NIAGMN_28740 0.15 +1.0 49,884 + dAP2 NIAGMN_28740 0.15 -0.8 49,885 - dAP2 NIAGMN_28740 0.15 +0.7 49,885 - dAP2 NIAGMN_28740 0.15 -2.3 49,886 + dAP2 NIAGMN_28740 0.15 -0.9 49,886 + dAP2 NIAGMN_28740 0.15 +1.9 49,886 + dAP2 NIAGMN_28740 0.15 -0.8 49,886 + dAP2 NIAGMN_28740 0.15 +0.6 49,886 + dAP2 NIAGMN_28740 0.15 -0.9 49,886 + dAP2 NIAGMN_28740 0.15 -1.7 49,886 + dAP2 NIAGMN_28740 0.15 +0.6 49,887 - dAP2 NIAGMN_28740 0.15 -1.3 49,887 - dAP2 NIAGMN_28740 0.15 -2.0 49,887 - dAP2 NIAGMN_28740 0.15 +2.0 49,887 - dAP2 NIAGMN_28740 0.15 +0.4 49,887 - dAP2 NIAGMN_28740 0.15 -2.1 49,887 - dAP2 NIAGMN_28740 0.15 +0.4 49,887 - dAP2 NIAGMN_28740 0.15 -0.3 49,887 - dAP2 NIAGMN_28740 0.15 -1.3 49,887 - dAP2 NIAGMN_28740 0.15 -1.5 49,887 - dAP2 NIAGMN_28740 0.15 -0.6 49,887 - dAP2 NIAGMN_28740 0.15 -0.7 49,887 - dAP2 NIAGMN_28740 0.15 -2.0 49,887 - dAP2 NIAGMN_28740 0.15 -3.3 49,919 - dAP2 NIAGMN_28740 0.19 -0.4 49,933 + dAP2 NIAGMN_28740 0.21 -0.8 49,934 - dAP2 NIAGMN_28740 0.21 +0.7 49,982 - dAP2 NIAGMN_28740 0.26 +0.3 49,982 - dAP2 NIAGMN_28740 0.26 -0.6 49,982 - dAP2 NIAGMN_28740 0.26 +0.2 49,983 + dAP2 NIAGMN_28740 0.27 +0.2 49,984 - dAP2 NIAGMN_28740 0.27 -2.2 49,984 - dAP2 NIAGMN_28740 0.27 -0.7 49,984 - dAP2 NIAGMN_28740 0.27 -0.6 50,005 + dAP2 NIAGMN_28740 0.29 -0.6 50,016 - dAP2 NIAGMN_28740 0.30 -0.0 50,016 - dAP2 NIAGMN_28740 0.30 +0.9 50,021 + dAP2 NIAGMN_28740 0.31 +1.9 50,022 - dAP2 NIAGMN_28740 0.31 -0.6 50,022 - dAP2 NIAGMN_28740 0.31 -1.3 50,084 + dAP2 NIAGMN_28740 0.38 -0.9 50,084 + dAP2 NIAGMN_28740 0.38 +1.6 50,085 - dAP2 NIAGMN_28740 0.38 +1.7 50,085 - dAP2 NIAGMN_28740 0.38 +0.2 50,085 - dAP2 NIAGMN_28740 0.38 +0.3 50,085 - dAP2 NIAGMN_28740 0.38 -0.7 50,085 - dAP2 NIAGMN_28740 0.38 +1.0 50,088 - dAP2 NIAGMN_28740 0.39 +2.8 50,096 - dAP2 NIAGMN_28740 0.40 -2.5 50,096 - dAP2 NIAGMN_28740 0.40 -1.4 50,096 - dAP2 NIAGMN_28740 0.40 +0.1 50,147 - dAP2 NIAGMN_28740 0.46 -0.6 50,239 + dAP2 NIAGMN_28740 0.56 -2.2 50,239 + dAP2 NIAGMN_28740 0.56 -1.2 50,240 - dAP2 NIAGMN_28740 0.56 -0.3 50,240 - dAP2 NIAGMN_28740 0.56 +0.7 50,247 - dAP2 NIAGMN_28740 0.57 -2.4 50,323 + dAP2 NIAGMN_28740 0.66 +0.6 50,330 - dAP2 NIAGMN_28740 0.67 +1.1 50,330 - dAP2 NIAGMN_28740 0.67 +0.3 50,365 + dAP2 NIAGMN_28740 0.71 +0.2 50,365 + dAP2 NIAGMN_28740 0.71 -0.2 50,365 + dAP2 NIAGMN_28740 0.71 -0.9 50,365 + dAP2 NIAGMN_28740 0.71 +0.8 50,366 - dAP2 NIAGMN_28740 0.71 +0.7 50,366 - dAP2 NIAGMN_28740 0.71 -0.2 50,366 - dAP2 NIAGMN_28740 0.71 +5.8 50,366 - dAP2 NIAGMN_28740 0.71 -0.1 50,525 + dAP2 NIAGMN_28740 0.90 -1.8 50,525 + dAP2 NIAGMN_28740 0.90 +0.3 50,526 - dAP2 NIAGMN_28740 0.90 +1.3 50,526 - dAP2 NIAGMN_28740 0.90 +0.8 50,526 - dAP2 NIAGMN_28740 0.90 +1.4 50,530 + +1.6 50,530 + +0.1 50,531 - -1.5 50,531 - -1.1 50,547 - -1.5 50,547 - +0.5 50,547 - -0.8 50,547 - -0.1 50,549 - -1.8 50,549 - -1.0 50,582 - +1.3 50,582 - -1.3 50,606 - -1.4 50,615 - -0.2 50,615 - -0.0 50,619 - +0.4 50,628 + +0.6 50,628 + -1.2 50,628 + +0.1 50,628 + +1.3 50,629 - +1.2 50,629 - +0.8 50,629 - -0.6 50,629 - +1.6 50,629 - +1.0 50,629 - +1.0 50,629 - -0.6 50,638 - +0.6 50,640 + +1.3 50,640 + -1.3 50,643 + -1.2
Or see this region's nucleotide sequence