Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnpB and tnpB overlap by 4 nucleotides tnpB and tfaX are separated by 75 nucleotides tfaX and ybcY are separated by 56 nucleotides ybcY and NIAGMN_28075 are separated by 497 nucleotides NIAGMN_28075 and yciE are separated by 78 nucleotides
NIAGMN_28055: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 5,436,175 to 5,436,522
tnpB
NIAGMN_28060: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 5,436,519 to 5,436,899
tnpB
NIAGMN_28065: tfaX - Protein TfaX, at 5,436,975 to 5,437,223
tfaX
NIAGMN_28070: ybcY - Putative uncharacterized protein YbcY, at 5,437,280 to 5,437,948
ybcY
NIAGMN_28075: NIAGMN_28075 - stress-induced acidophilic repeat motif-containing protein, at 5,438,446 to 5,438,628
_28075
NIAGMN_28080: yciE - Protein YciF, at 5,438,707 to 5,439,207
yciE
Position (kb) 5437
5438 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5437.004 kb on + strand, within tfaX at 5437.109 kb on + strand, within tfaX at 5437.337 kb on - strand at 5437.921 kb on - strand at 5438.777 kb on + strand, within yciE
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 5,437,004 + tfaX NIAGMN_28065 0.12 -0.1 5,437,109 + tfaX NIAGMN_28065 0.54 -2.4 5,437,337 - +0.4 5,437,921 - +2.0 5,438,777 + yciE NIAGMN_28080 0.14 -2.4
Or see this region's nucleotide sequence