Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27705

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarK and NIAGMN_27705 are separated by 94 nucleotidesNIAGMN_27705 and narX are separated by 25 nucleotides NIAGMN_27700: narK - nitrate transporter NarK, at 5,369,096 to 5,370,487 narK NIAGMN_27705: NIAGMN_27705 - hypothetical protein, at 5,370,582 to 5,370,800 _27705 NIAGMN_27710: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,370,826 to 5,372,622 narX Position (kb) 5370 5371Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5370.100 kb on - strand, within narKat 5370.262 kb on + strand, within narKat 5370.263 kb on - strand, within narKat 5370.487 kb on + strandat 5370.488 kb on - strandat 5370.678 kb on - strand, within NIAGMN_27705at 5370.731 kb on - strand, within NIAGMN_27705at 5370.731 kb on - strand, within NIAGMN_27705at 5370.752 kb on + strand, within NIAGMN_27705at 5370.752 kb on + strand, within NIAGMN_27705at 5370.823 kb on + strandat 5370.823 kb on + strandat 5370.862 kb on - strandat 5371.480 kb on - strand, within narX

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,370,100 - narK NIAGMN_27700 0.72 -0.9
5,370,262 + narK NIAGMN_27700 0.84 +3.1
5,370,263 - narK NIAGMN_27700 0.84 +0.1
5,370,487 + -1.4
5,370,488 - +0.6
5,370,678 - NIAGMN_27705 0.44 -0.6
5,370,731 - NIAGMN_27705 0.68 +0.9
5,370,731 - NIAGMN_27705 0.68 +0.4
5,370,752 + NIAGMN_27705 0.78 -2.6
5,370,752 + NIAGMN_27705 0.78 +0.1
5,370,823 + +1.1
5,370,823 + +0.4
5,370,862 - +0.2
5,371,480 - narX NIAGMN_27710 0.36 +2.2

Or see this region's nucleotide sequence