Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26685

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabI_F203V and yciW are separated by 143 nucleotidesyciW and rnb are separated by 67 nucleotides NIAGMN_26680: fabI_F203V - enoyl-[acyl-carrier-protein] reductase FabI, at 5,194,767 to 5,195,555 _F203V NIAGMN_26685: yciW - Uncharacterized protein YciW, at 5,195,699 to 5,196,826 yciW NIAGMN_26690: rnb - exoribonuclease II, at 5,196,894 to 5,198,828 rnb Position (kb) 5195 5196 5197Strain fitness (log2 ratio) -1 0 1 2 3at 5196.009 kb on - strand, within yciWat 5196.012 kb on - strand, within yciWat 5196.089 kb on + strand, within yciWat 5196.328 kb on - strand, within yciWat 5196.510 kb on + strand, within yciWat 5196.751 kb on + strandat 5196.821 kb on + strandat 5197.342 kb on - strand, within rnbat 5197.650 kb on + strand, within rnb

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,196,009 - yciW NIAGMN_26685 0.27 +1.1
5,196,012 - yciW NIAGMN_26685 0.28 +0.8
5,196,089 + yciW NIAGMN_26685 0.35 +0.4
5,196,328 - yciW NIAGMN_26685 0.56 +0.5
5,196,510 + yciW NIAGMN_26685 0.72 +1.0
5,196,751 + +0.1
5,196,821 + +3.3
5,197,342 - rnb NIAGMN_26690 0.23 +1.3
5,197,650 + rnb NIAGMN_26690 0.39 -0.4

Or see this region's nucleotide sequence