Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26290

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsieB and kilR are separated by 318 nucleotideskilR and ydaE overlap by 1 nucleotidesydaE and racC are separated by 74 nucleotidesracC and NIAGMN_26295 are separated by 101 nucleotides NIAGMN_26275: sieB - Superinfection exclusion protein B, at 5,117,881 to 5,118,492 sieB NIAGMN_26280: kilR - killing protein KilR, at 5,118,811 to 5,119,032 kilR NIAGMN_26285: ydaE - Uncharacterized protein YdaE, at 5,119,032 to 5,119,202 ydaE NIAGMN_26290: racC - Protein RacC, at 5,119,277 to 5,119,552 racC NIAGMN_26295: NIAGMN_26295 - exonuclease VIII, at 5,119,654 to 5,122,254 _26295 Position (kb) 5119 5120Strain fitness (log2 ratio) -1 0 1 2 3at 5118.388 kb on + strand, within sieBat 5118.895 kb on + strand, within kilRat 5119.265 kb on - strandat 5119.963 kb on - strand, within NIAGMN_26295at 5120.108 kb on + strand, within NIAGMN_26295at 5120.268 kb on - strand, within NIAGMN_26295at 5120.303 kb on - strand, within NIAGMN_26295at 5120.498 kb on - strand, within NIAGMN_26295at 5120.498 kb on - strand, within NIAGMN_26295

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,118,388 + sieB NIAGMN_26275 0.83 -1.4
5,118,895 + kilR NIAGMN_26280 0.38 +1.3
5,119,265 - -0.8
5,119,963 - NIAGMN_26295 0.12 +2.8
5,120,108 + NIAGMN_26295 0.17 +0.2
5,120,268 - NIAGMN_26295 0.24 +1.2
5,120,303 - NIAGMN_26295 0.25 +0.4
5,120,498 - NIAGMN_26295 0.32 -1.0
5,120,498 - NIAGMN_26295 0.32 +0.8

Or see this region's nucleotide sequence