Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25775

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydcK and rimL are separated by 234 nucleotidesrimL and ydcH are separated by 62 nucleotidesydcH and opgD are separated by 139 nucleotides NIAGMN_25765: ydcK - YdcK family protein, at 5,027,943 to 5,028,923 ydcK NIAGMN_25770: rimL - 50S ribosomal protein L7/L12-serine acetyltransferase, at 5,029,158 to 5,029,454 rimL NIAGMN_25775: ydcH - Uncharacterized protein YdcH, at 5,029,517 to 5,029,741 ydcH NIAGMN_25780: opgD - glucan biosynthesis protein OpgD, at 5,029,881 to 5,031,500 opgD Position (kb) 5029 5030Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5028.630 kb on + strand, within ydcKat 5028.669 kb on - strand, within ydcKat 5028.920 kb on - strandat 5029.519 kb on - strandat 5029.519 kb on - strandat 5029.782 kb on - strandat 5029.782 kb on - strandat 5029.907 kb on - strandat 5030.069 kb on - strand, within opgDat 5030.471 kb on - strand, within opgDat 5030.492 kb on - strand, within opgD

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,028,630 + ydcK NIAGMN_25765 0.70 -0.4
5,028,669 - ydcK NIAGMN_25765 0.74 +1.3
5,028,920 - -1.4
5,029,519 - -4.0
5,029,519 - -0.5
5,029,782 - -0.5
5,029,782 - -0.2
5,029,907 - -1.3
5,030,069 - opgD NIAGMN_25780 0.12 -1.1
5,030,471 - opgD NIAGMN_25780 0.36 +0.9
5,030,492 - opgD NIAGMN_25780 0.38 +1.6

Or see this region's nucleotide sequence