Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25645

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_25635 and yncG are separated by 75 nucleotidesyncG and ansP are separated by 266 nucleotidesansP and yncE are separated by 114 nucleotides NIAGMN_25635: NIAGMN_25635 - Uncharacterized protein YncH, at 5,002,984 to 5,003,196 _25635 NIAGMN_25640: yncG - Uncharacterized GST-like protein YncG, at 5,003,272 to 5,003,889 yncG NIAGMN_25645: ansP - L-asparagine permease, at 5,004,156 to 5,005,655 ansP NIAGMN_25650: yncE - Uncharacterized protein YncE, at 5,005,770 to 5,006,831 yncE Position (kb) 5004 5005 5006Strain fitness (log2 ratio) -2 -1 0 1 2at 5003.408 kb on + strand, within yncGat 5004.120 kb on + strandat 5004.120 kb on + strandat 5004.551 kb on + strand, within ansPat 5004.551 kb on + strand, within ansPat 5004.983 kb on + strand, within ansPat 5005.242 kb on + strand, within ansPat 5005.368 kb on - strand, within ansPat 5005.500 kb on + strand, within ansPat 5005.501 kb on - strand, within ansPat 5005.502 kb on + strand, within ansPat 5005.502 kb on + strand, within ansPat 5005.543 kb on + strandat 5005.769 kb on - strandat 5005.920 kb on - strand, within yncEat 5005.920 kb on - strand, within yncEat 5005.922 kb on - strand, within yncEat 5005.950 kb on - strand, within yncEat 5005.972 kb on + strand, within yncEat 5006.485 kb on - strand, within yncE

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,003,408 + yncG NIAGMN_25640 0.22 +0.6
5,004,120 + +0.7
5,004,120 + +0.4
5,004,551 + ansP NIAGMN_25645 0.26 +1.4
5,004,551 + ansP NIAGMN_25645 0.26 +1.4
5,004,983 + ansP NIAGMN_25645 0.55 -1.9
5,005,242 + ansP NIAGMN_25645 0.72 +0.7
5,005,368 - ansP NIAGMN_25645 0.81 +0.8
5,005,500 + ansP NIAGMN_25645 0.90 +0.1
5,005,501 - ansP NIAGMN_25645 0.90 +0.7
5,005,502 + ansP NIAGMN_25645 0.90 -0.4
5,005,502 + ansP NIAGMN_25645 0.90 +0.5
5,005,543 + -0.7
5,005,769 - -0.9
5,005,920 - yncE NIAGMN_25650 0.14 +1.4
5,005,920 - yncE NIAGMN_25650 0.14 +0.1
5,005,922 - yncE NIAGMN_25650 0.14 +2.6
5,005,950 - yncE NIAGMN_25650 0.17 -1.1
5,005,972 + yncE NIAGMN_25650 0.19 +1.7
5,006,485 - yncE NIAGMN_25650 0.67 +0.1

Or see this region's nucleotide sequence