Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25510

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddM and fdnI are separated by 227 nucleotidesfdnI and fdnH overlap by 8 nucleotidesfdnH and fdnG are separated by 12 nucleotides NIAGMN_25500: yddM - HigA family addiction module antitoxin, at 4,971,976 to 4,972,260 yddM NIAGMN_25505: fdnI - formate dehydrogenase-N subunit gamma, at 4,972,488 to 4,973,141 fdnI NIAGMN_25510: fdnH - formate dehydrogenase N subunit beta, at 4,973,134 to 4,974,018 fdnH NIAGMN_25515: fdnG - formate dehydrogenase-N subunit alpha, at 4,974,031 to 4,977,078 fdnG Position (kb) 4973 4974 4975Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4972.490 kb on - strandat 4972.630 kb on + strand, within fdnIat 4972.630 kb on + strand, within fdnIat 4972.631 kb on - strand, within fdnIat 4972.631 kb on - strand, within fdnIat 4972.858 kb on - strand, within fdnIat 4973.343 kb on - strand, within fdnHat 4973.343 kb on - strand, within fdnHat 4973.544 kb on + strand, within fdnHat 4973.658 kb on - strand, within fdnHat 4973.943 kb on - strandat 4974.115 kb on - strandat 4974.119 kb on - strandat 4974.119 kb on - strandat 4974.123 kb on - strandat 4974.194 kb on - strandat 4974.530 kb on + strand, within fdnGat 4974.531 kb on - strand, within fdnGat 4974.604 kb on - strand, within fdnGat 4974.723 kb on + strand, within fdnG

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,972,490 - +0.3
4,972,630 + fdnI NIAGMN_25505 0.22 -3.7
4,972,630 + fdnI NIAGMN_25505 0.22 +0.1
4,972,631 - fdnI NIAGMN_25505 0.22 -1.2
4,972,631 - fdnI NIAGMN_25505 0.22 -0.7
4,972,858 - fdnI NIAGMN_25505 0.57 +0.1
4,973,343 - fdnH NIAGMN_25510 0.24 -1.9
4,973,343 - fdnH NIAGMN_25510 0.24 +2.0
4,973,544 + fdnH NIAGMN_25510 0.46 +0.8
4,973,658 - fdnH NIAGMN_25510 0.59 -0.1
4,973,943 - +0.7
4,974,115 - +0.1
4,974,119 - +0.3
4,974,119 - -0.0
4,974,123 - -0.4
4,974,194 - +2.9
4,974,530 + fdnG NIAGMN_25515 0.16 -1.4
4,974,531 - fdnG NIAGMN_25515 0.16 +2.0
4,974,604 - fdnG NIAGMN_25515 0.19 +0.9
4,974,723 + fdnG NIAGMN_25515 0.23 +0.2

Or see this region's nucleotide sequence