Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25055

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_25040 and NIAGMN_25045 are separated by 11 nucleotidesNIAGMN_25045 and NIAGMN_25050 are separated by 14 nucleotidesNIAGMN_25050 and NIAGMN_25055 overlap by 4 nucleotidesNIAGMN_25055 and yjdB are separated by 7 nucleotidesyjdB and NIAGMN_25065 are separated by 13 nucleotides NIAGMN_25040: NIAGMN_25040 - DNA-packaging protein FI, at 4,870,839 to 4,871,237 _25040 NIAGMN_25045: NIAGMN_25045 - phage tail protein, at 4,871,249 to 4,871,602 _25045 NIAGMN_25050: NIAGMN_25050 - phage tail protein, at 4,871,617 to 4,872,150 _25050 NIAGMN_25055: NIAGMN_25055 - phage tail protein, at 4,872,147 to 4,872,542 _25055 NIAGMN_25060: yjdB - phage tail protein, at 4,872,550 to 4,873,302 yjdB NIAGMN_25065: NIAGMN_25065 - phage minor tail protein G, at 4,873,316 to 4,873,738 _25065 Position (kb) 4872 4873Strain fitness (log2 ratio) -1 0 1 2 3at 4871.365 kb on - strand, within NIAGMN_25045at 4871.911 kb on - strand, within NIAGMN_25050at 4872.129 kb on + strandat 4872.155 kb on + strandat 4872.288 kb on + strand, within NIAGMN_25055at 4872.335 kb on + strand, within NIAGMN_25055at 4872.335 kb on + strand, within NIAGMN_25055at 4872.335 kb on + strand, within NIAGMN_25055at 4872.349 kb on + strand, within NIAGMN_25055at 4872.488 kb on + strand, within NIAGMN_25055

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,871,365 - NIAGMN_25045 0.33 -0.8
4,871,911 - NIAGMN_25050 0.55 +1.5
4,872,129 + +3.4
4,872,155 + -0.3
4,872,288 + NIAGMN_25055 0.36 -1.2
4,872,335 + NIAGMN_25055 0.47 +1.3
4,872,335 + NIAGMN_25055 0.47 +0.7
4,872,335 + NIAGMN_25055 0.47 +0.3
4,872,349 + NIAGMN_25055 0.51 +0.9
4,872,488 + NIAGMN_25055 0.86 +1.2

Or see this region's nucleotide sequence