Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24830

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgp36 and NIAGMN_24830 are separated by 39 nucleotidesNIAGMN_24830 and beeE are separated by 37 nucleotides NIAGMN_24825: gp36 - phage major capsid protein, at 4,836,293 to 4,837,450 gp36 NIAGMN_24830: NIAGMN_24830 - HK97 family phage prohead protease, at 4,837,490 to 4,838,062 _24830 NIAGMN_24835: beeE - phage portal protein, at 4,838,100 to 4,839,275 beeE Position (kb) 4837 4838 4839Strain fitness (log2 ratio) -1 0 1 2 3at 4836.571 kb on + strand, within gp36at 4836.598 kb on + strand, within gp36at 4836.598 kb on + strand, within gp36at 4836.599 kb on - strand, within gp36at 4836.799 kb on + strand, within gp36at 4836.815 kb on + strand, within gp36at 4837.179 kb on - strand, within gp36at 4837.298 kb on + strand, within gp36at 4837.448 kb on + strandat 4837.456 kb on + strandat 4837.457 kb on + strandat 4837.469 kb on + strandat 4837.469 kb on + strandat 4837.469 kb on + strandat 4837.469 kb on + strandat 4837.482 kb on - strandat 4837.489 kb on + strandat 4837.642 kb on + strand, within NIAGMN_24830at 4837.869 kb on + strand, within NIAGMN_24830at 4838.063 kb on + strandat 4838.157 kb on + strandat 4838.161 kb on + strandat 4838.544 kb on + strand, within beeEat 4838.946 kb on + strand, within beeEat 4838.946 kb on + strand, within beeEat 4839.055 kb on + strand, within beeE

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,836,571 + gp36 NIAGMN_24825 0.24 +1.3
4,836,598 + gp36 NIAGMN_24825 0.26 +0.0
4,836,598 + gp36 NIAGMN_24825 0.26 -1.4
4,836,599 - gp36 NIAGMN_24825 0.26 +0.2
4,836,799 + gp36 NIAGMN_24825 0.44 -0.4
4,836,815 + gp36 NIAGMN_24825 0.45 -0.0
4,837,179 - gp36 NIAGMN_24825 0.77 -0.2
4,837,298 + gp36 NIAGMN_24825 0.87 -0.2
4,837,448 + +0.4
4,837,456 + -0.2
4,837,457 + +2.9
4,837,469 + -0.4
4,837,469 + -1.7
4,837,469 + -1.4
4,837,469 + -0.3
4,837,482 - +2.8
4,837,489 + -1.2
4,837,642 + NIAGMN_24830 0.27 -1.1
4,837,869 + NIAGMN_24830 0.66 +1.5
4,838,063 + -0.2
4,838,157 + -0.4
4,838,161 + -0.4
4,838,544 + beeE NIAGMN_24835 0.38 -1.2
4,838,946 + beeE NIAGMN_24835 0.72 -0.0
4,838,946 + beeE NIAGMN_24835 0.72 +2.8
4,839,055 + beeE NIAGMN_24835 0.81 +1.0

Or see this region's nucleotide sequence