Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24060

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdtG and lpxL are separated by 426 nucleotideslpxL and trhO are separated by 224 nucleotides NIAGMN_24055: mdtG - multidrug efflux MFS transporter MdtG, at 4,707,147 to 4,708,118 mdtG NIAGMN_24060: lpxL - kdo(2)-lipid IV(A) lauroyltransferase, at 4,708,545 to 4,709,465 lpxL NIAGMN_24065: trhO - rhodanese-related sulfurtransferase, at 4,709,690 to 4,710,742 trhO Position (kb) 4708 4709 4710Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4707.728 kb on + strand, within mdtGat 4707.970 kb on - strand, within mdtGat 4708.255 kb on + strandat 4708.374 kb on - strandat 4708.410 kb on + strandat 4708.432 kb on + strandat 4709.466 kb on - strandat 4709.487 kb on - strandat 4709.505 kb on - strandat 4709.641 kb on - strandat 4709.700 kb on + strandat 4709.803 kb on + strand, within trhOat 4709.967 kb on + strand, within trhOat 4710.052 kb on + strand, within trhOat 4710.262 kb on + strand, within trhOat 4710.284 kb on + strand, within trhOat 4710.284 kb on + strand, within trhOat 4710.285 kb on - strand, within trhOat 4710.346 kb on + strand, within trhOat 4710.463 kb on + strand, within trhO

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,707,728 + mdtG NIAGMN_24055 0.60 +0.8
4,707,970 - mdtG NIAGMN_24055 0.85 -1.7
4,708,255 + +0.6
4,708,374 - -0.4
4,708,410 + +0.7
4,708,432 + -1.5
4,709,466 - -0.1
4,709,487 - -1.4
4,709,505 - -0.1
4,709,641 - +1.3
4,709,700 + -0.2
4,709,803 + trhO NIAGMN_24065 0.11 -0.8
4,709,967 + trhO NIAGMN_24065 0.26 +3.4
4,710,052 + trhO NIAGMN_24065 0.34 +0.3
4,710,262 + trhO NIAGMN_24065 0.54 -2.0
4,710,284 + trhO NIAGMN_24065 0.56 +0.2
4,710,284 + trhO NIAGMN_24065 0.56 +6.0
4,710,285 - trhO NIAGMN_24065 0.57 +1.6
4,710,346 + trhO NIAGMN_24065 0.62 -0.6
4,710,463 + trhO NIAGMN_24065 0.73 +0.4

Or see this region's nucleotide sequence