Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdoG and mdoH are separated by 22 nucleotides mdoH and yceK are separated by 172 nucleotides yceK and msyB are separated by 0 nucleotides msyB and mdtG are separated by 82 nucleotides
NIAGMN_24030: mdoG - glucans biosynthesis protein MdoG, at 4,702,251 to 4,703,753
mdoG
NIAGMN_24035: mdoH - glucans biosynthesis glucosyltransferase MdoH, at 4,703,776 to 4,706,289
mdoH
NIAGMN_24045: yceK - YceK/YidQ family lipoprotein, at 4,706,462 to 4,706,689
yceK
NIAGMN_24050: msyB - MysB family protein, at 4,706,690 to 4,707,064
msyB
NIAGMN_24055: mdtG - multidrug efflux MFS transporter MdtG, at 4,707,147 to 4,708,118
mdtG
Position (kb) 4703
4704
4705
4706
4707 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4702.884 kb on - strand, within mdoG at 4702.973 kb on + strand, within mdoG at 4703.012 kb on + strand, within mdoG at 4703.017 kb on - strand, within mdoG at 4703.039 kb on + strand, within mdoG at 4703.107 kb on + strand, within mdoG at 4703.202 kb on + strand, within mdoG at 4703.360 kb on + strand, within mdoG at 4703.364 kb on + strand, within mdoG at 4703.364 kb on + strand, within mdoG at 4703.587 kb on + strand, within mdoG at 4703.607 kb on + strand at 4703.737 kb on + strand at 4703.948 kb on + strand at 4704.208 kb on + strand, within mdoH at 4704.208 kb on + strand, within mdoH at 4704.209 kb on - strand, within mdoH at 4704.210 kb on + strand, within mdoH at 4704.210 kb on + strand, within mdoH at 4704.307 kb on + strand, within mdoH at 4704.308 kb on - strand, within mdoH at 4704.309 kb on + strand, within mdoH at 4704.426 kb on + strand, within mdoH at 4704.427 kb on - strand, within mdoH at 4704.428 kb on + strand, within mdoH at 4704.428 kb on + strand, within mdoH at 4704.429 kb on - strand, within mdoH at 4704.586 kb on + strand, within mdoH at 4704.604 kb on + strand, within mdoH at 4704.726 kb on + strand, within mdoH at 4704.766 kb on + strand, within mdoH at 4704.766 kb on + strand, within mdoH at 4704.767 kb on - strand, within mdoH at 4704.767 kb on - strand, within mdoH at 4704.768 kb on + strand, within mdoH at 4704.768 kb on + strand, within mdoH at 4704.932 kb on - strand, within mdoH at 4705.162 kb on + strand, within mdoH at 4706.240 kb on + strand at 4706.265 kb on + strand at 4706.287 kb on + strand at 4706.295 kb on + strand at 4706.295 kb on + strand at 4706.687 kb on + strand at 4706.780 kb on + strand, within msyB at 4706.781 kb on - strand, within msyB at 4706.873 kb on + strand, within msyB at 4707.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,702,884 - mdoG NIAGMN_24030 0.42 +0.7 4,702,973 + mdoG NIAGMN_24030 0.48 +1.1 4,703,012 + mdoG NIAGMN_24030 0.51 -2.1 4,703,017 - mdoG NIAGMN_24030 0.51 -1.2 4,703,039 + mdoG NIAGMN_24030 0.52 -0.3 4,703,107 + mdoG NIAGMN_24030 0.57 +3.7 4,703,202 + mdoG NIAGMN_24030 0.63 +0.9 4,703,360 + mdoG NIAGMN_24030 0.74 -0.9 4,703,364 + mdoG NIAGMN_24030 0.74 +0.7 4,703,364 + mdoG NIAGMN_24030 0.74 -0.9 4,703,587 + mdoG NIAGMN_24030 0.89 -1.1 4,703,607 + -0.1 4,703,737 + +0.5 4,703,948 + +1.2 4,704,208 + mdoH NIAGMN_24035 0.17 +1.1 4,704,208 + mdoH NIAGMN_24035 0.17 -1.2 4,704,209 - mdoH NIAGMN_24035 0.17 +0.8 4,704,210 + mdoH NIAGMN_24035 0.17 +0.8 4,704,210 + mdoH NIAGMN_24035 0.17 -1.3 4,704,307 + mdoH NIAGMN_24035 0.21 +0.4 4,704,308 - mdoH NIAGMN_24035 0.21 +1.0 4,704,309 + mdoH NIAGMN_24035 0.21 +0.5 4,704,426 + mdoH NIAGMN_24035 0.26 +2.3 4,704,427 - mdoH NIAGMN_24035 0.26 +0.8 4,704,428 + mdoH NIAGMN_24035 0.26 +0.4 4,704,428 + mdoH NIAGMN_24035 0.26 -2.1 4,704,429 - mdoH NIAGMN_24035 0.26 +0.4 4,704,586 + mdoH NIAGMN_24035 0.32 +1.7 4,704,604 + mdoH NIAGMN_24035 0.33 -1.3 4,704,726 + mdoH NIAGMN_24035 0.38 -0.6 4,704,766 + mdoH NIAGMN_24035 0.39 +1.5 4,704,766 + mdoH NIAGMN_24035 0.39 -0.5 4,704,767 - mdoH NIAGMN_24035 0.39 +0.9 4,704,767 - mdoH NIAGMN_24035 0.39 +0.2 4,704,768 + mdoH NIAGMN_24035 0.39 +2.8 4,704,768 + mdoH NIAGMN_24035 0.39 +2.9 4,704,932 - mdoH NIAGMN_24035 0.46 -2.1 4,705,162 + mdoH NIAGMN_24035 0.55 -0.8 4,706,240 + -0.1 4,706,265 + -2.3 4,706,287 + -2.0 4,706,295 + +1.2 4,706,295 + -0.4 4,706,687 + +1.1 4,706,780 + msyB NIAGMN_24050 0.24 -0.3 4,706,781 - msyB NIAGMN_24050 0.24 +2.9 4,706,873 + msyB NIAGMN_24050 0.49 +2.7 4,707,197 - +1.1
Or see this region's nucleotide sequence