Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23980

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcgsG and cgsF are separated by 26 nucleotidescgsF and cgsE are separated by 24 nucleotidescgsE and cgsD are separated by 4 nucleotides NIAGMN_23970: cgsG - curli production assembly/transport protein CsgG, at 4,693,733 to 4,694,566 cgsG NIAGMN_23975: cgsF - curli production assembly/transport protein CsgF, at 4,694,593 to 4,695,009 cgsF NIAGMN_23980: cgsE - curli production assembly/transport protein CsgE, at 4,695,034 to 4,695,423 cgsE NIAGMN_23985: cgsD - transcriptional regulator CsgD, at 4,695,428 to 4,696,078 cgsD Position (kb) 4695 4696Strain fitness (log2 ratio) -1 0 1at 4694.162 kb on - strand, within cgsGat 4694.425 kb on + strand, within cgsGat 4695.410 kb on - strandat 4695.827 kb on + strand, within cgsDat 4696.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,694,162 - cgsG NIAGMN_23970 0.51 +1.1
4,694,425 + cgsG NIAGMN_23970 0.83 -1.7
4,695,410 - -1.2
4,695,827 + cgsD NIAGMN_23985 0.61 +1.0
4,696,041 - -1.5

Or see this region's nucleotide sequence